Comparative Genomic Studies of Salmonella Heidelberg Isolated From Chicken- and Turkey-Associated Farm Environmental Samples

Frontiers in Microbiology
Loïc DeblaisGireesh Rajashekara

Abstract

Salmonella is one of the leading causes of human foodborne gastroenteritis in the United States. In addition, Salmonella contributes to morbidity and mortality in livestock. The control of Salmonella is an increasing problematic issue in livestock production due to lack of effective control methods and the constant adaptation of Salmonella to new management practices, which is often related to horizontal acquisition of virulence or antibiotic resistance genes. Salmonella enterica serotype Heidelberg is one of the most commonly isolated serotypes in all poultry production systems in North America. Emergence and persistence of multi-drug resistant Salmonella Heidelberg isolates further impact the poultry production and public health. We hypothesized that distinct poultry production environments affect Salmonella genomic content, and by consequence its survival and virulence abilities. This study compared the genomic composition of S. Heidelberg isolated from environmental samples (19 chicken and 12 turkey isolates) of different breeder farms (16 chicken and 8 turkey farms) in the Midwest, United States. Whole genome comparison of 31 genomes using RAST and SEED identified differences in specific sub-systems in isolates between the...Continue Reading

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Citations

Dec 12, 2018·Microbiology Resource Announcements·Loïc DeblaisGireesh Rajashekara
Feb 19, 2019·EFSA Journal·UNKNOWN EFSA Panel on Biological Hazards (EFSA BIOHAZ Panel)Robert Davies
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Jun 15, 2021·EcoSal Plus·Eric W BrownMarc W Allard
Aug 19, 2021·Applied and Environmental Microbiology·Diéssy KipperVagner R Lunge
Sep 16, 2020·Microbiological Research·Hongxia BaoShu-Lin Liu

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Datasets Mentioned

BETA
PRJNA417775
SRP126070

Methods Mentioned

BETA
electrophoresis
PCR

Software Mentioned

JMP PRO
Phage Search Tool – Enhanced Released ( PHASTER )
PHASTER
RAST
CAFE
Casava
FastQC

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