Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila.

Frontiers in Microbiology
Wouter VersantvoortJoachim Reimann

Abstract

Methane is a potent greenhouse gas, which can be converted by microorganism at the expense of oxygen, nitrate, nitrite, metal-oxides or sulfate. The bacterium 'Candidatus Methylomirabilis oxyfera,' a member of the NC10 phylum, is capable of nitrite-dependent anaerobic methane oxidation. Prolonged enrichment of 'Ca. M. oxyfera' with cerium added as trace element and without nitrate resulted in the shift of the dominant species. Here, we present a high quality draft genome of the new species 'Candidatus Methylomirabilis lanthanidiphila' and use comparative genomics to analyze its metabolic potential in both nitrogen and carbon cycling. To distinguish between gene content specific for the 'Ca. Methylomirabilis' genus and the NC10 phylum, the genome of a distantly related NC10 phylum member, CSP1-5, an aerobic methylotroph, is included in the analysis. All genes for the conversion of nitrite to N2 identified in 'Ca. M. oxyfera' are conserved in 'Ca. M. lanthanidiphila,' including the two putative genes for NO dismutase. In addition both species have several heme-copper oxidases potentially involved in NO and O2 respiration. For the oxidation of methane 'Ca. Methylomirabilis' species encode a membrane bound methane monooxygenase. CS...Continue Reading

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Citations

Feb 17, 2019·Applied and Environmental Microbiology·Simon Guerrero-CruzBoran Kartal
Aug 3, 2019·FEMS Microbiology Ecology·Karen M HoughtonIan R McDonald
Jul 1, 2020·International Journal of Systematic and Evolutionary Microbiology·Aharon OrenMartha E Trujillo
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Aug 10, 2020·Biological Chemistry·Anna Hakobyan, Werner Liesack
Jan 17, 2021·Microbial Ecology·Natascha Menezes BergoVivian Helena Pellizari
Jan 24, 2021·Water Environment Research : a Research Publication of the Water Environment Federation·Lei ZhangJing Li
Feb 2, 2021·FEMS Microbiology Reviews·Rob A SchmitzHuub J M Op den Camp
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Jul 31, 2020·Journal of Hazardous Materials·Miguel Martínez-QuintelaFrancisco Omil
Jul 8, 2021·Microbiome·Obulisamy Parthiba KarthikeyanDeepak Kumaresan

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Datasets Mentioned

BETA
ERZ663421
ERS1904634

Software Mentioned

MEGA
BLAST BLAST
custom
MEGA6
BLASTp
CLC genomics workbench
SILVAngs
Axiovision
R
PROKKA

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