Apr 10, 2020

Reorganization of 3D genome structure in the Drosophila melanogaster species group

BioRxiv : the Preprint Server for Biology
Nicole S TorosinC. E. Ellison

Abstract

Topologically associating domains, or TADs, are functional units that organize chromosomes into 3D structures of interacting chromatin. TADs play an important role in regulating gene expression by constraining enhancer-promoter contacts; there is evidence that deletion of TAD boundaries leads to aberrant expression of neighboring genes. While the mechanisms of TAD formation have been well-studied, current knowledge on the extent of TAD conservation across species is inconclusive. Due to the integral role TADs play in gene regulation, their structure and organization is expected to be conserved during evolution. However, more recent research suggests that TAD structures diverge relatively rapidly. We use Hi-C chromosome conformation capture to measure evolutionary conservation of whole TADs and TAD boundary elements between D. melanogaster and D. triauraria, two early-branching species from the melanogaster species group which diverged ~28 million years ago. We found that 75% of TAD boundaries are orthologous while only 25% of TAD domains are conserved and these are enriched for Polycomb-repressed chromatin. Our results show that TADs have been reorganized since the common ancestor of D. melanogaster and D. triauraria, yet the s...Continue Reading

  • References
  • Citations

References

  • We're still populating references for this paper, please check back later.
  • References
  • Citations

Citations

  • This paper may not have been cited yet.

Mentioned in this Paper

Body Part
Yeasts
F3 wt Allele
Promoter
Gene Expression
Site
Ligand Binding Domain
Transcription Factor
Proximal
Saccharomycetales

Related Feeds

BioRxiv & MedRxiv Preprints

BioRxiv and MedRxiv are the preprint servers for biology and health sciences respectively, operated by Cold Spring Harbor Laboratory. Here are the latest preprint articles (which are not peer-reviewed) from BioRxiv and MedRxiv.

Related Papers

Current Opinion in Genetics & Development
Anne-Laure Valton, Job Dekker
BioRxiv : the Preprint Server for Biology
Linh Huynh, Fereydoun Hormozdiari
BioRxiv : the Preprint Server for Biology
Iain WilliamsonLaura A. Lettice
© 2020 Meta ULC. All rights reserved