PMID: 8594594Jan 1, 1996Paper

Compilation of DNA sequences of Escherichia coli K12 (ECD and ECDC; update 1995)

Nucleic Acids Research
M Kröger, R Wahl

Abstract

We have compiled the DNA sequence data for Escherichia coli available from the GenBank and EMBL data libraries and independently from the literature. Unlike the previous updates of our E.coli databases, we provide the most recent version preferentially via the World Wide Web System (use URL: http://susi.bio.unigiessen.de/usr/local/www++ +/html/ecdc.html). Our database includes an assembled set of contiguous sequences. Each of these contigs compiles all available sequence information, including those derived from a variety of elder sequences. The organization of the database allows one to find the exact physical location of each individual gene or regulatory region, even regarding discrepancies in nomenclature. The WWW program allows access into the original EMBL and SWISSPROT datafiles. A FASTA and BLAST search may be performed online. Besides the WWW format a flat file version may be obtained via ftp. The complete compilation, including a full set of genetic map data and the E.coli protein index, can be obtained in machine readable form from the EMBL data library as a part of the CD-ROM issue of the EMBL sequence database, released and updated every three months. After deletion of all detected overlaps a total of 3 333 878 ind...Continue Reading

References

Dec 1, 1992·Electrophoresis·R A VanBogelenF C Neidhardt
Dec 11, 1992·Nucleic Acids Research·M B Berlyn, S Letovsky
May 11, 1992·Nucleic Acids Research·M KrögerP Rice
Nov 1, 1991·Molecular Microbiology·C MédigueA Danchin
Apr 25, 1991·Nucleic Acids Research·M KrögerP Rice
Jan 25, 1990·Nucleic Acids Research·K E RuddD A Benson
Apr 25, 1990·Nucleic Acids Research·M KrögerP Rice
Sep 1, 1990·Molecular Microbiology·C MédigueA Danchin
Dec 1, 1989·Molecular & General Genetics : MGG·R P Birkenbihl, W Vielmetter
Jan 1, 1989·Nucleic Acids Research·M Kröger
Jul 11, 1989·Nucleic Acids Research·R P Birkenbihl, W Vielmetter
Jul 28, 1995·Science·R D FleischmannJ M Merrick
Sep 1, 1994·Nucleic Acids Research·R WahlM Kröger
Jul 1, 1993·Nucleic Acids Research·C M RiceG N Cameron
Jul 1, 1993·Nucleic Acids Research·M KrögerP Rice

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Citations

Apr 1, 1996·Trends in Genetics : TIG·K E Rudd
Jun 29, 1999·Microbiology and Immunology·M AshooriH Kurosaki

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