Complete Chloroplast Genomes of Papaver rhoeas and Papaver orientale: Molecular Structures, Comparative Analysis, and Phylogenetic Analysis

Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry
Jianguo ZhouHui Yao

Abstract

Papaver rhoeas L. and P. orientale L., which belong to the family Papaveraceae, are used as ornamental and medicinal plants. The chloroplast genome has been used for molecular markers, evolutionary biology, and barcoding identification. In this study, the complete chloroplast genome sequences of P. rhoeas and P. orientale are reported. Results show that the complete chloroplast genomes of P. rhoeas and P. orientale have typical quadripartite structures, which are comprised of circular 152,905 and 152,799-bp-long molecules, respectively. A total of 130 genes were identified in each genome, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Sequence divergence analysis of four species from Papaveraceae indicated that the most divergent regions are found in the non-coding spacers with minimal differences among three Papaver species. These differences include the ycf1 gene and intergenic regions, such as rpoB-trnC, trnD-trnT, petA-psbJ, psbE-petL, and ccsA-ndhD. These regions are hypervariable regions, which can be used as specific DNA barcodes. This finding suggested that the chloroplast genome could be used as a powerful tool to resolve the phylogenetic positions and relationships of Papaveraceae. These results o...Continue Reading

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Citations

Jul 19, 2018·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Inkyu ParkByeong Cheol Moon
Jan 16, 2019·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Yongfu LiXianrong Wang
Oct 4, 2019·Genome Génome / Conseil National De Recherches Canada·Liping NieHui Yao
Dec 19, 2019·Frontiers in Pharmacology·Zhonglian ZhangXiaojun Ma
Oct 20, 2018·International Journal of Molecular Sciences·Jaehyeon OhDowan Kim
Apr 13, 2018·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Xia LiuBoyang Zhou
Sep 27, 2018·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Xiaofeng ShenGuangwei Zhu
Feb 1, 2019·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Dong-Mei LiXiao-Fei Liu
Aug 19, 2020·Genetics and Molecular Biology·Luxian LiuPan Li
Nov 2, 2021·Journal of Forensic Sciences·Liu ChengXinyu Li

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Datasets Mentioned

BETA
MF943221

Methods Mentioned

BETA
electrophoresis
PCR

Software Mentioned

CPGAVAS
mVISTA
SSPACE
Trimmomatic
Modeltest
GapCloser
MISA
SOAPdenovo2
Clustal
Dual

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