Complete Genome Sequence of a Human Norovirus Strain from the United States Classified as Genotype GII.P6_GII.6

Genome Announcements
Haifeng ChenWeimin Wang

Abstract

We report here the complete genome sequence of a GII.6 norovirus strain detected in a clinical fecal specimen from the United States. The virus genome has a length of 7,547 bp and a GC content of 50.1%. Complete norovirus genotyping of the full-genome sequence identified the virus genotype as GII.P6_GII.6.

References

May 20, 2009·Bioinformatics·Heng Li, Richard Durbin
Sep 9, 2010·BMC Bioinformatics·Shiliang WangDavid Spiro
Jun 11, 2011·The Open Virology Journal·Haifeng ChenBiswendu B Goswami
Apr 18, 2012·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Anton BankevichPavel A Pevzner
Jun 7, 2012·Nucleic Acids Research·Shiliang WangTimothy B Stockwell
Apr 26, 2013·Archives of Virology·Annelies KronemanMarion Koopmans
Nov 1, 2013·Journal of Clinical Microbiology·Everardo VegaJan Vinjé
Jul 2, 2014·The Lancet Infectious Diseases·Sharia M AhmedBenjamin A Lopman

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Citations

Jul 5, 2019·Microbiology Resource Announcements·Haifeng ChenYuan Hu
Dec 12, 2018·Microbiology Resource Announcements·Yuan Hu, Haifeng Chen
Mar 12, 2021·Frontiers in Microbiology·Amy H FitzpatrickPaul Cotter

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Datasets Mentioned

BETA
AB039778
JX989075
HQ169542

Methods Mentioned

BETA
genotyping

Software Mentioned

BLASTN
VIGOR
CLC Genomics Workbench
Burrows Aligner ( BWA )
SPAdes

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