Complete Genome Sequence of a Novel Genotype of Pepper Mild Mottle Virus Infecting Pepper in Chile

Microbiology Resource Announcements
Sven M H Berendsen, Willem E W Schravesande

Abstract

The complete genome sequence of a Pepper mild mottle virus (PMMoV) found on pepper seeds produced in Chile in 2019 was determined using Oxford Nanopore Technologies and Sanger sequencing. The low nucleotide sequence identities (between 89% and 91%) to known PMMoV isolates suggested that this isolate belongs to a novel genotype.

References

Oct 29, 2009·Archives of Virology·Michael J AdamsJan Kreuze

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Datasets Mentioned

BETA
PRO54348
MT385868
SRR12834856

Methods Mentioned

BETA
reverse transcription-PCR

Software Mentioned

Porechop
CLC Genomics Workbench
Guppy
BLASTP
Whole Genome Alignment ( beta ) toolbox
Nanopolish
BLASTN

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