Complete Genome Sequence of Escherichia coli 81009, a Representative of the Sequence Type 131 C1-M27 Clade with a Multidrug-Resistant Phenotype

Genome Announcements
Michele MuttiValéria Szijártó

Abstract

The sequence type 131 (ST131)-H30 clone is responsible for a significant proportion of multidrug-resistant extraintestinal Escherichia coli infections. Recently, the C1-M27 clade of ST131-H30, associated with blaCTX-M-27, has emerged. The complete genome sequence of E. coli isolate 81009 belonging to this clone, previously used during the development of ST131-specific monoclonal antibodies, is reported here.

References

May 20, 2009·Bioinformatics·Heng Li, Richard Durbin
Jul 12, 2012·The Journal of Antimicrobial Chemotherapy·Ea ZankariMette Voldby Larsen
May 7, 2013·Nature Methods·Chen-Shan ChinJonas Korlach
Mar 20, 2014·Bioinformatics·Torsten Seemann
Apr 30, 2014·Antimicrobial Agents and Chemotherapy·Alessandra CarattoliHenrik Hasman
Oct 22, 2016·Emerging Infectious Diseases·Yasufumi MatsumuraSatoshi Ichiyama
Apr 19, 2017·Emerging Infectious Diseases·André BirgyStéphane Bonacorsi

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Datasets Mentioned

BETA
CP021179

Software Mentioned

Infernal
SignalP
Prodigal
Hierarchical Genome Assembly Process 4 ( HGAP4
Prokka
ARAGORN
ResFinder
Burrows Wheeler Alignment tool ( BWA )
PlasmidFinder
RNAmmer

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