Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae

Standards in Genomic Sciences
Carmen ScheunerHans-Peter Klenk

Abstract

Planctomyces brasiliensis Schlesner 1990 belongs to the order Planctomycetales, which differs from other bacterial taxa by several distinctive features such as internal cell compartmentalization, multiplication by forming buds directly from the spherical, ovoid or pear-shaped mother cell and a cell wall consisting of a proteinaceous layer rather than a peptidoglycan layer. The first strains of P. brasiliensis, including the type strain IFAM 1448(T), were isolated from a water sample of Lagoa Vermelha, a salt pit near Rio de Janeiro, Brasil. This is the second completed genome sequence of a type strain of the genus Planctomyces to be published and the sixth type strain genome sequence from the family Planctomycetaceae. The 6,006,602 bp long genome with its 4,811 protein-coding and 54 RNA genes is a part of the G enomic E ncyclopedia of Bacteria and Archaea project. Phylogenomic analyses indicate that the classification within the Planctomycetaceae is partially in conflict with its evolutionary history, as the positioning of Schlesneria renders the genus Planctomyces paraphyletic. A re-analysis of published fatty-acid measurements also does not support the current arrangement of the two genera. A quantitative comparison of phylog...Continue Reading

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Citations

Aug 23, 2017·International Journal of Systematic and Evolutionary Microbiology·Irina S KulichevskayaSvetlana N Dedysh
Dec 5, 2019·International Journal of Systematic and Evolutionary Microbiology·Irina S KulichevskayaSvetlana N Dedysh
May 6, 2020·International Journal of Systematic and Evolutionary Microbiology·Dhanesh KumarRamana Ch V
Jun 27, 2020·International Journal of Systematic and Evolutionary Microbiology·Jian WangXin Dai
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Methods Mentioned

BETA
454 sequencing
PCR

Software Mentioned

GBLOCKS
MARE
Polisher
Bubble
Prodigal GenePRIMP
R package opm
Velvet
MaSH
RAxML
Phred

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