Complete genome sequence of the aromatic-hydrocarbon-degrading bacterium Achromobacter xylosoxidans DN002

Archives of Microbiology
Yanbing LiYan-Ling Ma

Abstract

Achromobacter xylosoxidans DN002 is capable of utilizing numerous aromatic hydrocarbons as sole carbon and energy resource. In this study, the whole genome of strain DN002 was sequenced and analyzed, which consisted of one circular chromosome of 5,943,204 bp and a 278,917 bp plasmid with an average GC content of 65.46 mol%, 5694 protein-coding genes, 13 rRNA genes and 57 tRNA genes. Analysis of cluster of orthologous group (COG) demonstrated that strain DN002 had remarkable gene abundance foramino acid transport and metabolism, transcription, inorganic ion transport and metabolism, energy production and conversion, and carbohydrate transport and metabolism. Genes related to biodegradation of aromatic hydrocarbons, chemotaxis and flagella were identified from the genome, which will advance our fundamental understanding the molecular mechanism for degradation and metabolizing of aromatic hydrocarbons.

References

Jun 28, 2005·Nucleic Acids Research·Albert HsiaoShankar Subramaniam
Apr 25, 2007·Nucleic Acids Research·Karin LagesenDavid W Ussery
Feb 12, 2008·BMC Genomics·Ramy K AzizOlga Zagnitko
Apr 17, 2010·Nature Reviews. Microbiology·Morgan G I LangilleFiona S L Brinkman
Jul 14, 2010·Environmental Science and Pollution Research International·F Fernández-LuqueñoL Dendooven
Nov 17, 2011·Nucleic Acids Research·Victor M MarkowitzNikos C Kyrpides

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Datasets Mentioned

BETA
CP045222
CP045223

Software Mentioned

SIGI
BLASTclust
IslandPick
BlastP BLAST
HMMmethods
IslandPath
DIMOB
Islands Viewer
CanuV1
Canu

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