Complete mitochondrial genome of the blackspot seabream, Pagellus bogaraveo (Perciformes: Sparidae), with high levels of length heteroplasmy in the WANCY region

Gene
Marian PonceManuel Manchado

Abstract

The complete mitochondrial genome sequence of the blackspot seabream, Pagellus bogaraveo, was obtained using the long PCR/cloning method. The total length of the mitogenome was 16,941 bp, and had a gene content (13 protein-coding, two ribosomal RNAs, and 22 transfer RNAs) and organization similar to those observed in most other vertebrates. Nevertheless, two main features in the WANCY region revealed as unique in P. bogaraveo mitogenome. First, the O(L) was disrupted by the insertion of a 66 bp long element that was determined to be a tRNA(Cys) pseudogene; second, the existence of high levels of length heteroplasmy, both intra-and inter-individuals, as a result of sequence duplications and deletions. The tandem duplication and random loss (TDRL) model as well as recombination are proposed to account for the length heteroplasmy and gene rearrangements in the P. bogaraveo WANCY region.

References

Jan 1, 1992·International Review of Cytology·D A Clayton
Nov 1, 1991·Journal of Molecular Evolution·S PääboA C Wilson
Mar 1, 1991·Trends in Biochemical Sciences·D A Clayton
Feb 11, 1990·Nucleic Acids Research·S JohansenT Johansen
Apr 1, 1982·Cell·D A Clayton
Oct 1, 1984·Genetics·T Ohta, G A Dover
Oct 1, 1981·Cell·M J BibbD A Clayton
Jul 1, 1995·Journal of Molecular Evolution·W J LeeT D Kocher
May 15, 1997·Nature·D H Lunt, B C Hyman
Jan 1, 1997·Annual Review of Biochemistry·G S Shadel, D A Clayton
Aug 27, 1998·Molecular Biology and Evolution·A Arndt, M J Smith
Mar 17, 1999·Biochimica Et Biophysica Acta·J W Taanman
Apr 2, 1999·Nucleic Acids Research·J L Boore
Sep 11, 1999·Trends in Ecology & Evolution·J P Curole, T D Kocher
May 23, 2001·Trends in Ecology & Evolution·M Dowton, N J.H. Campbell
Jun 23, 2001·Molecular Biology and Evolution·E D Ladoukakis, E Zouros
Jun 23, 2001·Molecular Biology and Evolution·J R EberhardE Bermingham
Jul 1, 2005·Molecular Biology and Evolution·Rachel Lockridge Mueller, Jeffrey L Boore
Sep 24, 2005·Molecular Biology and Evolution·Diego San MauroMark Wilkinson
Jan 25, 2006·Journal of Theoretical Biology·Hervé SeligmannBasuthkar J Rao
Feb 8, 2006·Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution·Hervé Seligmann, Neeraja M Krishnan
Sep 27, 2006·Molecular Biology and Evolution·Katsunori Ogoh, Yoshihiro Ohmiya

❮ Previous
Next ❯

Citations

Aug 30, 2012·Mitochondrial DNA·Rishen LiangJixing Zou
Oct 17, 2014·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Can-Lin ZhouChang-Geng Yang
Jun 29, 2011·Mitochondrial DNA·Juan ZhangAnxing Li
Jun 26, 2014·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Liran DrayDorothée Huchon
Aug 27, 2014·Journal of Theoretical Biology·Jia WenStephen S T Yau
Dec 28, 2018·The Journal of Heredity·Piotr ŁukasikJohn P McCutcheon
Nov 20, 2018·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Lixiang ZhaoXing Ye

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.