Complete mitochondrial genome of the versicoloured emerald hummingbird Amazilia versicolor, a polymorphic species

Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis
Francisco ProsdocimiW Bryan Jennings

Abstract

The genome of the versicoloured emerald hummingbird (Amazilia versicolor) was partially sequenced in one-sixth of an Illumina HiSeq lane. The mitochondrial genome was assembled using MIRA and MITObim software, yielding a circular molecule of 16,861 bp in length and deposited in GenBank under the accession number KF624601. The mitogenome contained 13 protein-coding genes, 22 transfer tRNAs, 2 ribosomal RNAs and 1 non-coding control region. The molecule was assembled using 21,927 sequencing reads of 100 bp each, resulting in ∼130 × coverage of uniformly distributed reads along the genome. This is the forth mitochondrial genome described for this highly diverse family of birds and may benefit further phylogenetic, phylogeographic, population genetic and species delimitation studies of hummingbirds.

References

Jan 25, 2008·BMC Evolutionary Biology·Mary Morgan-RichardsDavid Penny
Mar 27, 2012·Briefings in Bioinformatics·Iain MilneDavid Marshall
Sep 18, 2012·Molecular Phylogenetics and Evolution·Matthias BerntPeter F Stadler
May 21, 2014·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Helena Magarinos SoutoFrancisco Prosdocimi

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Citations

Jan 29, 2017·Mitochondrial DNA. Part A. DNA Mapping, Sequencing, and Analysis·Nicholas Costa Barroso Lima, Francisco Prosdocimi

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