Comprehensive analyses of the annexin (ANN) gene family in Brassica rapa, Brassica oleracea and Brassica napus reveals their roles in stress response.

Scientific Reports
Xin HeWei Hua

Abstract

Annexins (ANN) are a multigene, evolutionarily conserved family of calcium-dependent and phospholipid-binding proteins that play important roles in plant development and stress resistance. However, a systematic comprehensive analysis of ANN genes of Brassicaceae species (Brassica rapa, Brassica oleracea, and Brassica napus) has not yet been reported. In this study, we identified 13, 12, and 26 ANN genes in B. rapa, B. oleracea, and B. napus, respectively. About half of these genes were clustered on various chromosomes. Molecular evolutionary analysis showed that the ANN genes were highly conserved in Brassicaceae species. Transcriptome analysis showed that different group ANN members exhibited varied expression patterns in different tissues and under different (abiotic stress and hormones) treatments. Meanwhile, same group members from Arabidopsis thaliana, B. rapa, B. oleracea, and B. napus demonstrated conserved expression patterns in different tissues. The weighted gene coexpression network analysis (WGCNA) showed that BnaANN genes were induced by methyl jasmonate (MeJA) treatment and played important roles in jasmonate (JA) signaling and multiple stress response in B. napus.

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Citations

Dec 10, 2020·Plant Physiology and Biochemistry : PPB·Adnan Noor ShahYouhong Song
Feb 24, 2021·Journal of Plant Physiology·Maxim MudrilovVladimir Vodeneev
Sep 4, 2021·Plant Physiology and Biochemistry : PPB·Kui LiDayong Wei

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Datasets Mentioned

BETA
GSE42891

Methods Mentioned

BETA
transgenic
environmental stress
RNA-Seq

Software Mentioned

R
WGCNA
DnaSP ( DNA Sequence Polymorphism )
ANN
NONE
Compute pI / Mw
ProtComp
ClustalW
Heatmap Illustrator
MEME

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