Comprehensive Study on Enteric Viruses and Indicators in Surface Water in Kyoto, Japan, During 2014-2015 Season

Food and Environmental Virology
Akihiko HataHiroaki Tanaka

Abstract

Certain enteric viruses that are present in the water environment are potential risk factors of waterborne infections. To better understand the impact of viruses in water, both enteric viruses and their potential indicators should be comparatively investigated. In this study, occurrences of GI- and GII-noroviruses (NoVs), sapovirus (SaV), rotavirus (RoV), Aichi virus 1 (AiV-1), enterovirus (EV), and pepper mild mottle virus (PMMoV) were quantitatively determined in surface water samples in Japan. Additionally, the genotype distribution of GI- and GII-NoVs was determined using a next-generation amplicon sequencing. PMMoV was the most abundant virus regardless of season and location, indicating its usefulness as an indicator for the viral contamination of water. Other potential indicators, AiV and EV, were less abundant than GII-NoV. Viruses other than PMMoV showed seasonality, i.e., EV and other viruses (NoVs, SaV, RoV, and AiV-1) became prevalent during summer and winter, respectively. SaV showed a relatively high abundance at a location that was affected by untreated wastewater. Regarding NoV genotypes, GI.1, GI.2, GI.4, GI.5, GI.6, GII.3, GII.4, GII.6, and GII.17 were found from the surface water samples. GII.4 and GII.17 see...Continue Reading

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Citations

Dec 8, 2019·Applied and Environmental Microbiology·Elbashir AraudThanh H Nguyen
Apr 29, 2020·Virologica Sinica·Enrique Rivadulla, Jesús L Romalde
Jun 5, 2020·Journal of Infection and Public Health·Pattara KhamrinNiwat Maneekarn

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Datasets Mentioned

BETA
M87661

Methods Mentioned

BETA
amplicon sequencing
PCR
electrophoresis
genotyping
environmental stress
environmental stresses

Software Mentioned

CLC Genomics Workbench
Clustal W
KOD plus
Norovirus Genotyping Tool

Related Concepts