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Compression of short-read sequences using path encoding

bioRxiv

Jun 24, 2014

Carl Kingsford, Rob Patro

Abstract

Storing, transmitting, and archiving the amount of data produced by next generation sequencing is becoming a significant computational burden. For example, large-scale RNA-seq meta-analyses may now routinely process tens of terabytes of sequence. We present here an approach to biologica...read more

Mentioned in this Paper

Meta Analysis (Statistical Procedure)
Genome
Trees (plant)
Genome Assembly Sequence
Anatomical Space Structure
Sequencing
Massively-Parallel Sequencing
Reading Frames (Nucleotide Sequence)
Toxic Epidermal Necrolysis
Zaglossus bruijni
19
20
Paper Details
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Compression of short-read sequences using path encoding

bioRxiv

Jun 24, 2014

Carl Kingsford, Rob Patro

PMID: 990006551

DOI: 10.1101/006551

Abstract

Storing, transmitting, and archiving the amount of data produced by next generation sequencing is becoming a significant computational burden. For example, large-scale RNA-seq meta-analyses may now routinely process tens of terabytes of sequence. We present here an approach to biologica...read more

Mentioned in this Paper

Meta Analysis (Statistical Procedure)
Genome
Trees (plant)
Genome Assembly Sequence
Anatomical Space Structure
Sequencing
Massively-Parallel Sequencing
Reading Frames (Nucleotide Sequence)
Toxic Epidermal Necrolysis
Zaglossus bruijni
19
20
Paper Details
References
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  • Citations
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
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