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Compression of short-read sequences using path encoding

bioRxiv

Jun 24, 2014

Carl Kingsford, Rob Patro

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Abstract

Storing, transmitting, and archiving the amount of data produced by next generation sequencing is becoming a significant computational burden. For example, large-scale RNA-seq meta-analyses may now routinely process tens of terabytes of sequence. We present here an approach to biologica...read more

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Genome
Toxic Epidermal Necrolysis
Large-Scale Sequencing
Molecular Assembly/Self Assembly
Anatomical Space Structure
Trees (plant)
Transcriptome
Zaglossus bruijni
Massively-Parallel Sequencing
Reading Frames (Nucleotide Sequence)
19
20
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  • Compression of short-read sequences using path encoding

    bioRxiv

    Jun 24, 2014

    Carl Kingsford, Rob Patro

    PMID: 990006551

    DOI: 10.1101/006551

    Abstract

    Storing, transmitting, and archiving the amount of data produced by next generation sequencing is becoming a significant computational burden. For example, large-scale RNA-seq meta-analyses may now routinely process tens of terabytes of sequence. We present here an approach to biologica...read more

    Mentioned in this Paper

    Genome
    Toxic Epidermal Necrolysis
    Large-Scale Sequencing
    Molecular Assembly/Self Assembly
    Anatomical Space Structure
    19
    20
    Paper Details
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