Computer-aided neurophysiology and imaging with open-source PhysImage

Journal of Neurophysiology
John A HayesGilles Fortin

Abstract

Improved integration between imaging and electrophysiological data has become increasingly critical for rapid interpretation and intervention as approaches have advanced in recent years. Here, we present PhysImage, a fork of the popular public-domain ImageJ that provides a platform for working with these disparate sources of data, and we illustrate its utility using in vitro preparations from murine embryonic and neonatal tissue. PhysImage expands ImageJ's core features beyond an imaging program by facilitating integration, analyses, and display of 2D waveform data, among other new features. Together, with the Micro-Manager plugin for image acquisition, PhysImage substantially improves on closed-source or blended approaches to analyses and interpretation, and it furthermore aids post hoc automated analysis of physiological data when needed as we demonstrate here. Developing a high-throughput approach to neurophysiological analyses has been a major challenge for neurophysiology as a whole despite data analytics methods advancing rapidly in other areas of neuroscience, biology, and especially genomics. NEW & NOTEWORTHY High-throughput analyses of both concurrent electrophysiological and imaging recordings has been a major challen...Continue Reading

References

Apr 29, 2005·The Journal of Neuroscience : the Official Journal of the Society for Neuroscience·Muriel Thoby-BrissonGilles Fortin
Aug 3, 2005·PLoS Medicine·John P A Ioannidis
Aug 24, 2005·Nature Neuroscience·Edward S BoydenKarl Deisseroth
Nov 25, 2005·Proceedings of the National Academy of Sciences of the United States of America·Xiang LiStefan Herlitze
Apr 6, 2007·Journal of Neurophysiology·John A Hayes, Christopher A Del Negro
Jan 23, 2009·Nature Methods·Christoph LutzValentina Emiliani
Jul 7, 2009·Nature Neuroscience·Muriel Thoby-BrissonGilles Fortin
Jul 9, 2010·Journal of Neurophysiology·Ilya ValmianskiDavid Kleinfeld
Oct 5, 2010·Current Protocols in Molecular Biology·Arthur EdelsteinNico Stuurman
Jan 12, 2011·Neuron·Darcy S PeterkaRafael Yuste
May 31, 2011·Journal of Neural Engineering·Sunggu YangValentina Emiliani
Jan 1, 2010·Frontiers in Neural Circuits·Benjamin A SuterGordon M G Shepherd
Mar 13, 2012·Neuron·Christine Grienberger, Arthur Konnerth
Jun 30, 2012·Nature Methods·Johannes SchindelinAlbert Cardona
Aug 30, 2012·Nature Methods·Caroline A SchneiderKevin W Eliceiri
Jan 30, 2013·Respiratory Physiology & Neurobiology·Gregory D Funk, John J Greer
Feb 22, 2013·The Journal of Neuroscience : the Official Journal of the Society for Neuroscience·Kaiwen KamJack L Feldman
Feb 27, 2013·The Journal of Physiology·Xueying WangChristopher A Del Negro
Feb 14, 2014·Frontiers in Neuroinformatics·Luke CampagnolaPaul B Manis
Oct 16, 2015·The Journal of Neuroscience : the Official Journal of the Society for Neuroscience·Valentina EmilianiMichael Häusser

❮ Previous
Next ❯

Citations

Nov 10, 2020·Protein Science : a Publication of the Protein Society·Alexandra B SchroederKevin W Eliceiri
Jan 21, 2020·Cell Stem Cell·Jorge-Miguel Faustino MartinsMina Gouti
Mar 20, 2020·Heliyon·Kazuyuki Kiyosue, Yoshihiro Miwa

❮ Previous
Next ❯

Software Mentioned

EpisodicWaves
Java Math
EphysFile
ByteProcessor
pClamp10
pClamp
py script
ChartPlugIn
Programming→Iterate Plugin Directory Tree
Fiji

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

Related Papers

The Lancet. Psychiatry
Claudia Lugo-Candelas, Jonathan Posner
M.D. Computing : Computers in Medical Practice
G Zucconi
CRC Critical Reviews in Bioengineering
H W Shipton
© 2022 Meta ULC. All rights reserved