Cotton genome mapping with new microsatellites from Acala 'Maxxa' BAC-ends

Molecular Genetics and Genomics : MGG
James E FrelichowskiMauricio Ulloa

Abstract

Fine mapping and positional cloning will eventually improve with the anchoring of additional markers derived from genomic clones such as BACs. From 2,603 new BAC-end genomic sequences from Gossypium hirsutum Acala 'Maxxa', 1,316 PCR primer pairs (designated as MUSB) were designed to flank microsatellite or simple sequence repeat motif sequences. Most (1164 or 88%) MUSB primer pairs successfully amplified DNA from three species of cotton with an average of three amplicons per marker and 365 markers (21%) were polymorphic between G. hirsutum and G. barbadense. An interspecific RIL population developed from the above two entries was used to map 433 marker loci and 46 linkage groups with a genetic distance of 2,126.3 cM covering approximately 45% of the cotton genome and an average distance between two loci of 4.9 cM. Based on genome-specific chromosomes identified in G. hirsutum tetraploid (A and D), 56.9% of the coverage was located on the A subgenome while 39.7% was assigned to the D subgenome in the genetic map, suggesting that the A subgenome may be more polymorphic and recombinationally active than originally thought. The linkage groups were assigned to 23 of the 26 chromosomes. This is the first genetic map in which the link...Continue Reading

References

Sep 15, 1992·Proceedings of the National Academy of Sciences of the United States of America·H ShizuyaM Simon
Oct 5, 1990·Journal of Molecular Biology·S F AltschulD J Lipman
Nov 1, 1994·Genetics·G A Churchill, R W Doerge
Dec 1, 1994·Current Opinion in Genetics & Development·D Tautz, Schlötterer
Apr 29, 1998·Proceedings of the National Academy of Sciences of the United States of America·C JiangA H Paterson
Nov 5, 1999·Methods in Molecular Biology·S Rozen, H Skaletsky
Jul 27, 2000·The Journal of Heredity·S LiuR G Cantrell
May 2, 2001·Nature Reviews. Genetics·T D Petes
Jan 19, 2002·Nature Genetics·Michele MorganteWayne Powell
Feb 13, 2003·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·M. UlloaA. L. Kahler
Aug 5, 2003·Genome Génome / Conseil National De Recherches Canada·J-M LacapeB Hau
Sep 27, 2003·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·M MeiZ J Chen
Nov 25, 2003·DNA Sequence : the Journal of DNA Sequencing and Mapping·Earl Taliercio, Mauricio Ulloa
Mar 5, 2004·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·T-B NguyenJ-M Lacape
May 14, 2004·Genome Research·Caroline M NievergeltNicholas J Schork
Jun 16, 2004·Genome Research·Stéphane BoissinotAnthony V Furano
Jun 16, 2004·Molecular Genetics and Genomics : MGG·C P HongY P Lim
Aug 19, 2004·The Plant Cell·Shui WangXiao-Ya Chen
Oct 19, 2004·Genetics·Jeong-Soon KimDavid M Stelly
Dec 18, 2004·Plant Molecular Biology·A Bulak ArpatThea A Wilkins
Jan 5, 2005·Trends in Biotechnology·Rajeev K VarshneyMark E Sorrells
Apr 15, 2005·The Journal of Heredity·J-M Lacape, T B Nguyen
Jun 3, 2005·Genome Research·Josefa GonzálezAlfredo Ruiz
Feb 1, 1993·Genome Génome / Conseil National De Recherches Canada·J A AndersonM E Sorrells
Sep 1, 1997·American Journal of Botany·J Hof, S Saha
Jul 1, 1995·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·R C JansenC Dean
Jun 1, 2002·The New Phytologist·Andrew H Paterson

❮ Previous
Next ❯

Citations

Dec 20, 2005·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·C WangP A Roberts
Mar 14, 2008·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Chuanfu AnDavid M Stelly
Apr 24, 2009·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Jean-Marc LacapeC Viot
Jan 20, 2011·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Xiaolei WuHenry T Nguyen
Apr 23, 2011·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Renzhong LiuTianzhen Zhang
Feb 12, 2013·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Caiping CaiWangzhen Guo
Mar 9, 2013·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Mauricio UlloaR Michael Davis
Dec 24, 2008·Molecular Genetics and Genomics : MGG·Pablo F CavagnaroPhilipp W Simon
May 3, 2011·Molecular Genetics and Genomics : MGG·Mauricio UlloaPhilip A Roberts
Jun 4, 2008·Plant Molecular Biology·Yuepeng Han, Schuyler S Korban
Dec 7, 2007·Plant Physiology·Z Jeffrey ChenAndrew H Paterson
Jun 8, 2012·Genome Génome / Conseil National De Recherches Canada·Ximei LiXianlong Zhang
Feb 22, 2008·International Journal of Plant Genomics·Hong-Bin ZhangPeng W Chee
Jun 2, 2006·BMC Genomics·Anna BlendaDorrie Main
Oct 21, 2009·BMC Plant Biology·Allen Van DeynzeDavid M Stelly
Dec 24, 2010·PloS One·Zhanyou XuRichard G Percy
Oct 6, 2009·Science in China. Series C, Life Sciences·Feng JiangTianZhen Zhang
Dec 24, 2008·Journal of Genetics and Genomics = Yi Chuan Xue Bao·Xuexia MaTianzhen Zhang
Aug 21, 2008·Journal of Integrative Plant Biology·Xue-Xia MaTian-Zhen Zhang
Jul 16, 2008·Genomics·Zhanyou XuJohn Z Yu

❮ Previous
Next ❯

Related Concepts

Related Feeds

Artificial Chromosomes

Artificial chromosomes are genetically engineered chromosomes derived from the DNA of a species. Discover the latest research on artificial chromosomes here.