Cotton QTLdb: a cotton QTL database for QTL analysis, visualization, and comparison between Gossypium hirsutum and G. hirsutum × G. barbadense populations

Molecular Genetics and Genomics : MGG
Joseph I SaidJinfa Zhang

Abstract

A specialized database currently containing more than 2200 QTL is established, which allows graphic presentation, visualization and submission of QTL. In cotton quantitative trait loci (QTL), studies are focused on intraspecific Gossypium hirsutum and interspecific G. hirsutum × G. barbadense populations. These two populations are commercially important for the textile industry and are evaluated for fiber quality, yield, seed quality, resistance, physiological, and morphological trait QTL. With meta-analysis data based on the vast amount of QTL studies in cotton it will be beneficial to organize the data into a functional database for the cotton community. Here we provide a tool for cotton researchers to visualize previously identified QTL and submit their own QTL to the Cotton QTLdb database. The database provides the user with the option of selecting various QTL trait types from either the G. hirsutum or G. hirsutum × G. barbadense populations. Based on the user's QTL trait selection, graphical representations of chromosomes of the population selected are displayed in publication ready images. The database also provides users with trait information on QTL, LOD scores, and explained phenotypic variances for all QTL selected. T...Continue Reading

References

Apr 29, 1998·Proceedings of the National Academy of Sciences of the United States of America·C JiangA H Paterson
Feb 18, 2003·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·A H PatersonR J Wright
Sep 27, 2003·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·M MeiZ J Chen
Jun 29, 2005·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Peng CheeAndrew H Paterson
Jun 29, 2005·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Peng W CheeAndrew H Paterson
Jul 5, 2005·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Xavier DrayeAndrew H Paterson
Jun 2, 2006·BMC Genomics·Anna BlendaDorrie Main
Sep 9, 2006·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Xinlian ShenPeng Chee
Jul 8, 2008·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Hongde QinTianzhen Zhang
Aug 21, 2008·Journal of Integrative Plant Biology·Hong-Mei WangYun-Hai Li
Jun 6, 2009·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Hong ChenTianzhen Zhang
Jun 10, 2009·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Peizheng WangTianzhen Zhang
Oct 6, 2009·Science in China. Series C, Life Sciences·Feng JiangTianZhen Zhang
Oct 16, 2009·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Gabriela Beatriz RomanoJodi A Scheffler
Nov 26, 2009·Science in China. Series C, Life Sciences·YongJun FengZengYi Chang
Jul 8, 2010·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Osman A GutiérrezFranklin E Callahan
Aug 4, 2010·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Xinlian ShenPeng W Chee
Sep 17, 2010·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Osman A GutiérrezRobert L Nichols
May 3, 2011·Molecular Genetics and Genomics : MGG·Mauricio UlloaPhilip A Roberts
Feb 3, 2012·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Peng WangTianzhen Zhang
Mar 9, 2013·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Mauricio UlloaR Michael Davis
Nov 10, 2013·Nucleic Acids Research·Jing YuDorrie Main

❮ Previous
Next ❯

Citations

May 4, 2016·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Lianguang ShangJinping Hua
Jun 26, 2017·Molecular Genetics and Genomics : MGG·Abdelraheem AbdelraheemJinfa F Zhang
Sep 8, 2020·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Qishen GuZhiying Ma
Dec 7, 2018·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Gregory N ThyssenDavid D Fang
Mar 15, 2018·Frontiers in Plant Science·Zhaoyun TanZhengsheng Zhang
Nov 27, 2019·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Abdelraheem AbdelraheemJinfa Zhang
Apr 15, 2019·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Chengxiang SongDaigang Yang
Dec 18, 2019·G3 : Genes - Genomes - Genetics·Corrinne E GroverJonathan F Wendel
Feb 9, 2021·Frontiers in Genetics·Edwige Gaby Nkouaya MbanjoChiedozie Egesi

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.