CRISPR-Based Typing and Next-Generation Tracking Technologies

Annual Review of Food Science and Technology
Rodolphe Barrangou, Edward G Dudley

Abstract

Bacteria occur ubiquitously in nature and are broadly relevant throughout the food supply chain, with diverse and variable tolerance levels depending on their origin, biological role, and impact on the quality and safety of the product as well as on the health of the consumer. With increasing knowledge of and accessibility to the microbial composition of our environments, food supply, and host-associated microbiota, our understanding of and appreciation for the ratio of beneficial to undesirable bacteria are rapidly evolving. Therefore, there is a need for tools and technologies that allow definite, accurate, and high-resolution identification and typing of various groups of bacteria that include beneficial microbes such as starter cultures and probiotics, innocuous commensals, and undesirable pathogens and spoilage organisms. During the transition from the current molecular biology-based PFGE (pulsed-field gel electrophoresis) gold standard to the increasingly accessible omics-level whole-genome sequencing (WGS) N-gen standard, high-resolution technologies such as CRISPR-based genotyping constitute practical and powerful alternatives that provide valuable insights into genome microevolution and evolutionary trajectories. Indee...Continue Reading

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Citations

Mar 1, 2017·Annual Review of Food Science and Technology·Emily StoutRodolphe Barrangou
Jul 18, 2018·Annals of Human Genetics·Sleiman Razzouk
May 18, 2019·Molecular Genetics and Genomics : MGG·Ana Carolina de Oliveira LuzTereza Cristina Leal-Balbino
Jul 30, 2019·Frontiers in Microbiology·Silin TangMartin Wiedmann
Nov 30, 2019·BMC Genomics·Matthew A NetheryRodolphe Barrangou
Jun 6, 2017·Nature Microbiology·Rodolphe Barrangou, Philippe Horvath
Dec 16, 2020·Animals : an Open Access Journal From MDPI·Koeun KimYoung Ju Lee
May 21, 2018·International Journal of Food Microbiology·Katheryne V DaughtryRodolphe Barrangou
Aug 6, 2021·Frontiers in Microbiology·Clémence BeauruellePhilippe Lanotte
Nov 14, 2020·Current Stem Cell Reports·Arun PradhanVladimir V Kalinichenko
Dec 12, 2021·Nucleic Acids Research·Xinfu ZhangMichael P Terns

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Methods Mentioned

BETA
genotyping
acid mine drainage
electrophoresis
PCR
Illumina sequencing

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