Critical Steps in Data Management During a Crisis.

Cytometry. Part a : the Journal of the International Society for Analytical Cytology
Michele BlackKyle Herstad

Abstract

Data management is essential in a flow cytometry (FCM) shared resource laboratory (SRL) for the integrity of collected data and its long-term preservation, as described in the Cytometry publication from 2016, ISAC Flow Cytometry Shared Resource Laboratory (SRL) Best Practices (Barsky et al.: Cytometry Part A 89A(2016): 1017-1030). The SARS-CoV-2 pandemic introduced an array of challenges in the operation of SRLs. The subsequent laboratory shutdowns and access restrictions brought to the forefront well-established practices that withstood the impact of a sudden change in operations and illuminated areas that need improvement. The most significant challenges from a data management perspective were data access for remote analysis and workstation management. Notably, lessons learned from this challenge emphasize the importance of safeguarding collected data from loss in various emergencies such as fire or natural disasters where the physical hardware storing data could be directly affected. Here, we describe two data management systems that have been successful during the current emergency created by the pandemic, specifically remote access and automated data transfer. We will discuss other situations that could arise and lead to d...Continue Reading

References

Sep 1, 2007·Academic Medicine : Journal of the Association of American Medical Colleges·N Kevin KraneIan L Taylor
Aug 30, 2008·Cytometry. Part a : the Journal of the International Society for Analytical Cytology·Jamie A LeeRyan R Brinkman
Jun 28, 2016·Cytometry. Part B, Clinical Cytometry·Josef Spidlen, Ryan R Brinkman

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Methods Mentioned

BETA
Flow Cytometry

Software Mentioned

Python
PY )
FlowJo
UW G Suite
Cytek Spectroflow®
MIFlowCyt
UWNetID
GD
FCM
PY

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