Data of de novo assembly and annotation of transcriptome from Aspidistra fenghuangensis (Asparagaceae: Nolinoideae)

Data in Brief
Ran MengYing Meng

Abstract

Aspidistra is a large genus of herbaceous plants with more than 130 species growing in tropical forests of SE Asia and specially diversified in southern China and northern Vietnam. The genus is characterized by its evergreen understorey habitats with flowers set at ground level and more or less hidden in litter material. Aspidistra fenghuangensis is a species currently only known from central China. In recent years, number of species in this genus has been greatly increased. However, the high throughput sequencing data have never been reported in this genus. Here, we sequenced the transcriptome of A. fenghuangensis obtained from young leaves using the Illumina HiSeq2000 with 9.15Gb of clean data. Because of the absence of a reference-grade genome in the genus, a de novo assembly of the transcriptome data with full annotation have been carried out. This data is accessible via NCBI BioProject (PRJNA608213).

References

Dec 11, 1999·Nucleic Acids Research·R L TatusovE V Koonin
Dec 19, 2003·Nucleic Acids Research·Rolf ApweilerLai-Su L Yeh
Dec 19, 2003·Nucleic Acids Research·Minoru KanehisaMasahiro Hattori
May 17, 2011·Nature Biotechnology·Manfred G GrabherrAviv Regev
Oct 13, 2012·Bioinformatics·Limin FuWeizhong Li
Nov 14, 2018·Bioinformatics·Shifu ChenJia Gu

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Datasets Mentioned

BETA
number

Methods Mentioned

BETA
PCR

Software Mentioned

BLAST2GO
BLAST
TransDecoder
cBot Cluster Generation System
Bench
marking ( BUSCO )
Fastp
Trinity

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