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DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

BMC Bioinformatics

Mar 31, 2011

Yongchao LiuDouglas L Maskell

Abstract

Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter and more error-prone than conventional Sanger shotgun reads. This poses a challenge for the de novo assembly in terms o...read more

Mentioned in this Paper

Severe Acute Respiratory Syndrome
In Silico
Complement System Proteins
Filtration
AS 2
Insertion Sequence Elements
Computer Programs and Programming
Sequencing
Massively-Parallel Sequencing
Programming Languages
Paper Details
References
  • References21
  • Citations11
123
  • References21
  • Citations11
12

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DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

BMC Bioinformatics

Mar 31, 2011

Yongchao LiuDouglas L Maskell

PMID: 21447171

DOI: 10.1186/1471-2105-12-85

Abstract

Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter and more error-prone than conventional Sanger shotgun reads. This poses a challenge for the de novo assembly in terms o...read more

Mentioned in this Paper

Severe Acute Respiratory Syndrome
In Silico
Complement System Proteins
Filtration
AS 2
Insertion Sequence Elements
Computer Programs and Programming
Sequencing
Massively-Parallel Sequencing
Programming Languages

Similar Papers Found In These Feeds

Viral Hemorrhagic Fevers

Viral Hemorrhagic Fevers caused by ebola, marburg and lassa viruses often manifest as multiple organ dysfunction and hemorrhagic shock with high mortality. Discover the latest research on Viral Hemorrhagic Fevers here.

Severe Acute Respiratory Syndrome

Severe acute respiratory syndrome (SARS) is a viral respiratory disease of zoonotic origin caused by the SARS coronavirus (SARS-CoV). Initial symptoms are flu-like and may include fever, muscle pain, lethargy symptoms, cough, sore throat, and other nonspecific symptoms. SARS may eventually lead to shortness of breath and pneumonia; either direct viral pneumonia or secondary bacterial pneumonia. DIscover the latest research on SARS here.

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Reptile: representative tiling for short read error correction

BioinformaticsSeptember 14, 2010
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BMC Genomics

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BMC GenomicsDecember 24, 2011
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Paper Details
References
  • References21
  • Citations11
123
  • References21
  • Citations11
12
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