DecoFungi: a web application for automatic characterisation of dye decolorisation in fungal strains

BMC Bioinformatics
César DomínguezVico Pascual

Abstract

Fungi have diverse biotechnological applications in, among others, agriculture, bioenergy generation, or remediation of polluted soil and water. In this context, culture media based on color change in response to degradation of dyes are particularly relevant; but measuring dye decolorisation of fungal strains mainly relies on a visual and semiquantitative classification of color intensity changes. Such a classification is a subjective, time-consuming and difficult to reproduce process. DecoFungi is the first, at least up to the best of our knowledge, application to automatically characterise dye decolorisation level of fungal strains from images of inoculated plates. In order to deal with this task, DecoFungi employs a deep-learning model, accessible through a user-friendly web interface, with an accuracy of 96.5%. DecoFungi is an easy to use system for characterising dye decolorisation level of fungal strains from images of inoculated plates.

References

Mar 2, 2011·Applied Biochemistry and Biotechnology·Annette SørensenBirgitte K Ahring
Jan 27, 2016·Applied Microbiology and Biotechnology·Felipe S Chambergo, Estela Y Valencia

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Software Mentioned

Inception
VGG19
DecoFungi
scikit
VGG16
Keras
Django
learn
Excel
DenseNet

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