Distinct co-occurrence patterns of prokaryotic community between the waters and sediments in lakes with different salinity.

FEMS Microbiology Ecology
Jian YangBeichen Wang

Abstract

Temporal variations and co-occurrence patterns of the prokaryotic community in saline lakes remain elusive. In this study, we investigated the temporal variations of the prokaryotic community in six lakes with different salinity by using Illumina sequencing. The results showed that prokaryotic community compositions exhibited temporal variations in all studied lakes, which may be partially caused by temporal fluctuations of environmental variables (e.g. salinity, temperature, total nitrogen). Salinity fluctuations exhibited stronger influences on temporal variations of prokaryotic community composition in the lakes with low salinity than in those with high salinity. Stochastic factors (i.e. neutral processes) also contributed to temporal variations of prokaryotic community composition, and their contributions decreased with increasing salinity in the studied saline lakes. Network analysis showed that prokaryotic co-occurrence networks of the studied lakes exhibited non-random topology. Salinity affected the phylogenetic composition of nodes in the studied networks. The topological features (e.g. average connectivity and modularity) of the studied networks significantly differed between lake waters and sediments. Collectively, t...Continue Reading

References

Jun 13, 2002·Proceedings of the National Academy of Sciences of the United States of America·M Girvan, M E J Newman
Feb 9, 2005·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·Aaron ClausetCristopher Moore
Apr 12, 2006·Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics·Feng LuoJizhong Zhou
May 5, 2006·Applied and Environmental Microbiology·Martin Allgaier, Hans-Peter Grossart
May 26, 2006·Proceedings of the National Academy of Sciences of the United States of America·M E J Newman
Sep 7, 2007·Environmental Microbiology·Hongchen JiangChuanlun L Zhang
Nov 9, 2007·Extremophiles : Life Under Extreme Conditions·Mirjam J FotiGerard Muyzer
Dec 14, 2007·Proceedings of the National Academy of Sciences of the United States of America·Katleen Van der GuchtLuc De Meester
Nov 9, 2010·Environmental Microbiology·Aharon Oren
Sep 2, 2011·The ISME Journal·Alexander EilerStefan Bertilsson
Jun 1, 2012·BMC Bioinformatics·Ye DengJizhong Zhou
Jul 17, 2012·Nature Reviews. Microbiology·Karoline Faust, Jeroen Raes
Dec 21, 2012·The ISME Journal·Ramiro LogaresStefan Bertilsson
Sep 6, 2013·Microbiology and Molecular Biology Reviews : MMBR·Diana R NemergutScott Ferrenberg
Aug 12, 2014·Extremophiles : Life Under Extreme Conditions·Aharon Oren
Mar 1, 2015·Applied and Environmental Microbiology·Lijuan RenQinglong L Wu
Jan 10, 2016·Applied and Environmental Microbiology·Zhi-Ping ZhongZhi-Pei Liu
Dec 6, 2016·Trends in Microbiology·Mehdi LayeghifardDavid S Guttman
Jul 22, 2017·The ISME Journal·Benjamin J CallahanSusan P Holmes
May 24, 2018·Nature Reviews. Microbiology·Samiran BanerjeeMarcel G A van der Heijden
Nov 18, 2018·The ISME Journal·Kristin M RathJohannes Rousk
Mar 10, 2019·The ISME Journal·Samiran BanerjeeMarcel G A van der Heijden
Jun 12, 2019·FEMS Microbiology Ecology·Keshao LiuZhengquan Gu
Jul 26, 2019·Nature Biotechnology·Evan BolyenJ Gregory Caporaso
Aug 9, 2019·Proceedings of the National Academy of Sciences of the United States of America·Daliang NingJizhong Zhou
Aug 17, 2019·The ISME Journal·Natalia García-GarcíaFernando Puente-Sánchez
Oct 28, 2019·Nature Communications·Cameron WaggMarcel G A van der Heijden
Nov 20, 2019·Proceedings of the National Academy of Sciences of the United States of America·Andrew J TanentzapThorsten Dittmar

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