Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1

Standards in Genomic Sciences
Hannes HornUte Hentschel

Abstract

The Gram-positive actinomycete Williamsia sp. ARP1 was originally isolated from the Arabidopsis thaliana phyllosphere. Here we describe the general physiological features of this microorganism together with the draft genome sequence and annotation. The 4,745,080 bp long genome contains 4434 protein-coding genes and 70 RNA genes. To our knowledge, this is only the second reported genome from the genus Williamsia and the first sequenced strain from the phyllosphere. The presented genomic information is interpreted in the context of an adaptation to the phyllosphere habitat.

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Citations

Aug 10, 2016·International Journal of Systematic and Evolutionary Microbiology·Peter KämpferStefanie P Glaeser
Oct 14, 2017·Genome Announcements·Akhikun NaharMargaret L Britz
Nov 28, 2019·Environmental Microbiology Reports·Katherine MocciaSarah L Lebeis
May 24, 2019·Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry·Saliya GurusingheLeslie A Weston

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Datasets Mentioned

BETA
PRJNA272726
JXYP00000000

Methods Mentioned

BETA
PCR
chip

Software Mentioned

IDBA
a5
CR
InParanoid
Velvet
PhyML
PILER
Trimmomatic
BLASTn
NucleoMag NGS Clean - up Select

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