Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Strain MS-FC-4

Genome Announcements
Ryan P BartelmeMark J McBride

Abstract

Flavobacterium columnare MS-FC-4 is a highly virulent genetic group 1 (formerly genomovar I) strain isolated from rainbow trout (Oncorhynchus mykiss). The draft genome consists of three contigs totaling 3,449,277 bp with 2,811 predicted open reading frames. F. columnare MS-FC-4 is a model strain for functional genomic analyses.

References

Jan 16, 2007·International Journal of Systematic and Evolutionary Microbiology·Johan GorisJames M Tiedje
Feb 12, 2008·Current Protocols in Molecular Biology·K Wilson
Jun 10, 2009·Bioinformatics·Heng LiUNKNOWN 1000 Genome Project Data Processing Subgroup
Dec 8, 2009·Proceedings of the National Academy of Sciences of the United States of America·Keiko SatoKoji Nakayama
Mar 6, 2012·Nature Methods·Ben Langmead, Steven L Salzberg
Apr 27, 2012·Journal of Bacteriology·Hasan C TekedarMark L Lawrence
Apr 27, 2013·Veterinary Research·Annelies Maria DeclercqAnnemie Decostere
May 5, 2016·Nucleic Acids Research·David ArndtDavid S Wishart
Jun 28, 2016·Nucleic Acids Research·Tatiana TatusovaJames Ostell
Sep 3, 2016·Genome Announcements·Yulei ZhangLi Lin
Apr 15, 2017·Genome Announcements·Jason P EvenhuisJoerg Graf
Sep 25, 2017·Applied and Environmental Microbiology·Nan LiMark J McBride
Mar 30, 2018·Frontiers in Microbiology·Benjamin R LaFrentzSiow F Chang

❮ Previous
Next ❯

Citations

May 16, 2021·Current Microbiology·Jason P EvenhuisClayton Birkett

❮ Previous
Next ❯

Software Mentioned

SAMtools
Pilon
Canu
PHASTER
Bowtie 2

Related Concepts

Related Feeds

CRISPR (general)

Clustered regularly interspaced short palindromic repeats (CRISPR) are DNA sequences in the genome that are recognized and cleaved by CRISPR-associated proteins (Cas). CRISPR-Cas system enables the editing of genes to create or correct mutations. Discover the latest research on CRISPR here.

CRISPR Ribonucleases Deactivation

CRISPR-Cas system enables the editing of genes to create or correct mutations. This feed focuses on mechanisms that underlie deactivation of CRISPR ribonucleases. Here is the latest research.