Dynamics of gene expression patterns during early development of the European seabass (Dicentrarchus labrax)

Physiological Genomics
E KaitetzidouE Sarropoulou

Abstract

Larval and embryonic stages are the most critical period in the life cycle of marine fish. Key developmental events occur early in development and are influenced by external parameters like stress, temperature, salinity, and photoperiodism. Any failure may cause malformations, developmental delays, poor growth, and massive mortalities. Advanced understanding of molecular processes underlying marine larval development may lead to superior larval rearing conditions. Today, the new sequencing and bioinformatic methods allow transcriptome screens comprising messenger (mRNA) and microRNA (miRNA) with the scope of detecting differential expression for any species of interest. In the present study, we applied Illumina technology to investigate the transcriptome of early developmental stages of the European seabass (Dicentrarchus labrax). The European seabass, in its natural environment, is a euryhaline species and has shown high adaptation processes in early life phases. During its embryonic and larval phases the European seabass lives in a marine environment and as a juvenile it migrates to coastal zones, estuaries, and lagoons. Investigating the dynamics of gene expression in its early development may shed light on factors promoting...Continue Reading

References

Oct 5, 1990·Journal of Molecular Biology·S F AltschulD J Lipman
Apr 1, 1987·Environmental Research·H MichibataM K Kojima
Jul 1, 1995·Developmental Dynamics : an Official Publication of the American Association of Anatomists·C B KimmelT F Schilling
May 29, 2000·Current Opinion in Genetics & Development·K Dooley, L I Zon
Apr 5, 2002·Genome Research·W James Kent
Mar 6, 2003·Genome Research·John S TaylorYves Van de Peer
Oct 7, 2003·Nature Genetics·Erno WienholdsRonald H A Plasterk
Jan 8, 2004·Genome Biology·Anton J EnrightDebora S Marks
Apr 24, 2004·Science·Soraya YektaDavid P Bartel
Jun 24, 2004·Mechanisms of Development·Takashi Iwamatsu
Jun 24, 2004·Nature Reviews. Genetics·Lin He, Gregory J Hannon
May 28, 2005·Science·Erno WienholdsRonald H A Plasterk
Jun 7, 2005·Genes & Development·Po Yu ChenThomas Tuschl
Jul 16, 2005·Biochemical and Biophysical Research Communications·Shao-Yao Ying, Shi-Lung Lin
Aug 23, 2005·FEBS Letters·Erno Wienholds, Ronald H A Plasterk
Oct 15, 2005·Development·Ines Alvarez-Garcia, Eric A Miska
Jul 18, 2006·Nucleic Acids Research·Jan Krüger, Marc Rehmsmeier
Aug 22, 2006·Current Drug Targets·E SteinerW Berger
Nov 23, 2006·Current Biology : CB·Zhigang Jin, Ting Xie
May 12, 2007·BMC Bioinformatics·Tom MichoelYves Van de Peer
Jul 21, 2007·Science·Noam Stern-GinossarOfer Mandelboim
Jul 27, 2007·Journal of Gastroenterology·Hiroshige HoriYoshikazu Kuroda
Feb 26, 2008·Marine Biotechnology·E SarropoulouG Kotoulas
May 17, 2008·International Journal of Plant Genomics·Ana Conesa, Stefan Götz
Oct 28, 2008·Developmental Biology·Nozomi YoshinariAtsushi Kawakami
Nov 19, 2008·Nature Reviews. Genetics·Zhong WangMichael Snyder
Feb 3, 2009·Gastroenterology·Nicholas J HandJoshua R Friedman
Mar 6, 2009·Genome Biology·Ben LangmeadSteven L Salzberg
Apr 29, 2009·BMC Genomics·Ana R SoaresManuel A S Santos
Oct 27, 2009·Molecular Phylogenetics and Evolution·Elena SarropoulouGeorgios Kotoulas
Mar 12, 2010·New Biotechnology·Anders Fjose, Xiao-Feng Zhao
May 12, 2010·Nature Biotechnology·Brian J Haas, Michael C Zody
Oct 29, 2010·Genome Biology·Simon Anders, Wolfgang Huber

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Citations

Sep 20, 2015·Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology·Jan A Mennigen
Sep 3, 2020·Marine Biotechnology·Maria PapadakiElena Sarropoulou
Aug 14, 2019·Frontiers in Genetics·Elena SarropoulouMichalis Pavlidis
Mar 8, 2019·Scientific Reports·Elisavet KaitetzidouElena Sarropoulou
Oct 21, 2021··Srinivas AluruAnkit Srivastava

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