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Efficient Approach to Correct Read Alignment for Pseudogene Abundance Estimates

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Jul 14, 2016

Chelsea J.-T. JuWei Wang

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Abstract

RNA-Sequencing has been the leading technology to quantify expression of thousands of genes simultaneously. The data analysis of an RNA-Seq experiment starts from aligning short reads to the reference genome/transcriptome or reconstructed transcriptome. However, current aligners lack th...read more

Mentioned in this Paper

Gene Duplication
Genes
Genome
Log-Linear Models
Physiological Processes
Pseudogenes
RNA
Determination, Sequence Homology
Cell Line, Tumor
Research Study
6
25
Paper Details
References
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  • Efficient Approach to Correct Read Alignment for Pseudogene Abundance Estimates

    IEEE/ACM Transactions on Computational Biology and Bioinformatics

    Jul 14, 2016

    Chelsea J.-T. JuWei Wang

    PMID: 27429446

    DOI: 10.1109/tcbb.2016.2591533

    Abstract

    RNA-Sequencing has been the leading technology to quantify expression of thousands of genes simultaneously. The data analysis of an RNA-Seq experiment starts from aligning short reads to the reference genome/transcriptome or reconstructed transcriptome. However, current aligners lack th...read more

    Mentioned in this Paper

    Gene Duplication
    Genes
    Genome
    Log-Linear Models
    Physiological Processes
    6
    25
    Paper Details
    References
    • References21
    • Citations
    • References21
    • Citations

      No citations available

      This paper may not have been cited yet.
  • Get paper from

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