Endogenous viruses: Connecting recent and ancient viral evolution

Virology
Pakorn Aiewsakun, Aris Katzourakis

Abstract

The rapid rates of viral evolution allow us to reconstruct the recent history of viruses in great detail. This feature, however, also results in rapid erosion of evolutionary signal within viral molecular data, impeding studies of their deep history. Thus, the further back in time, the less accurate the inference becomes. Furthermore, reconstructing complex histories of transmission can be challenging, especially where extinct viral lineages are concerned. This problem has been partially solved by the discovery of viruses embedded in host genomes, known as endogenous viral elements (EVEs). Some of these endogenous viruses are derived from ancient relatives of extant viruses, allowing us to better examine ancient viral host range, geographical distribution and transmission routes. Moreover, our knowledge of viral evolutionary timescales and rate dynamics has also been greatly improved by their discovery, thereby bridging the gap between recent and ancient viral evolution.

References

May 1, 1990·The Journal of General Virology·D B Stoltz
Sep 1, 1989·Proceedings of the National Academy of Sciences of the United States of America·E OritoT Gojobori
Nov 24, 1988·Nature·P M Sharp, W H Li
Jan 1, 1980·Cold Spring Harbor Symposia on Quantitative Biology·S M AstrinW S Hayward
Mar 31, 1995·Journal of Molecular Biology·D J McGeochE A Telford
Apr 1, 1994·Trends in Microbiology·H U Bernard
Jan 23, 1996·Proceedings of the National Academy of Sciences of the United States of America·E R BejaranoC Lichtenstein
Aug 1, 1997·Molecular Biology and Evolution·Y Suzuki, T Gojobori
Jun 22, 1999·The Journal of General Virology·N DelaroqueD G Müller
Aug 25, 1999·Epidemiology and Infection·J ChantreyM Bennett
Nov 11, 1999·Proceedings of the National Academy of Sciences of the United States of America·M SalemiA M Vandamme
Dec 23, 1999·Current Opinion in Genetics & Development·A F Smit
May 18, 2000·Biochemical Society Transactions·P M SharpB H Hahn
Feb 27, 2001·Journal of Virology·C PatienceR A Weiss
Jun 23, 2001·Molecular Biology and Evolution·A DrummondA G Rodrigo
Nov 15, 2001·Proceedings of the National Academy of Sciences of the United States of America·S M Young, R J Samulski
Dec 26, 2001·Nucleic Acids Research·Jan PacesVáclav Paces
Jan 17, 2002·Proceedings of the National Academy of Sciences of the United States of America·Sudhir Kumar, Sankar Subramanian
Feb 1, 2002·Journal of Molecular Evolution·Gareth M JenkinsEdward C Holmes
May 7, 2002·Journal of Virology·Elise BelleJean-Michel Drezen
Jan 2, 2003·Proceedings of the National Academy of Sciences of the United States of America·Dan MishmarDouglas C Wallace
Dec 19, 2003·Nucleic Acids Research·Jan PacesVáclav Paces
Jan 13, 2004·Science·Eduardo Ruiz-PesiniDouglas C Wallace
Mar 12, 2004·Molecular Ecology·Edward C Holmes
Apr 14, 2004·Emerging Infectious Diseases·A Townsend PetersonJames N Mills
May 14, 2004·Journal of Virology·Gregory J BaillieDixie L Mager
Jun 26, 2004·The Journal of General Virology·Sandrine CrochuXavier de Lamballerie
Jul 20, 2004·Proceedings of the National Academy of Sciences of the United States of America·Colin A Bill, Jesse Summers
Dec 23, 2004·Journal of Virology·Duncan J McGeoch, Derek Gatherer
Jan 1, 2005·Proceedings of the National Academy of Sciences of the United States of America·Laura A ShackeltonEdward C Holmes
Jan 7, 2005·Molecular Biology and Evolution·Philippe LemeyAnne-Mieke Vandamme

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Citations

Jan 29, 2016·APMIS : Acta Pathologica, Microbiologica, Et Immunologica Scandinavica·Robin A Weiss
Nov 8, 2015·Virus Research·Shin-Yi Lee Marzano, Leslie L Domier
Dec 20, 2015·Immunological Reviews·Philipp Yu
Aug 25, 2015·The Journal of General Virology·Robin A Weiss
Jan 23, 2016·Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases·C TamaletD Raoult
Feb 7, 2016·Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases·Mauro Pistello, Guido Antonelli
Sep 4, 2015·Proceedings of the National Academy of Sciences of the United States of America·Matthias G Fischer
Jun 27, 2015·BMC Evolutionary Biology·Pakorn Aiewsakun, Aris Katzourakis
Jun 1, 2016·Database : the Journal of Biological Databases and Curation·So Nakagawa, Mahoko Ueda Takahashi
Aug 25, 2016·Frontiers in Microbiology·Magali Naville, Jean-Nicolas Volff
Dec 21, 2016·Annals of the New York Academy of Sciences·Aurélie Kapusta, Alexander Suh
Aug 16, 2016·PLoS Pathogens·Yuki KobayashiYoshiyuki Suzuki
Oct 25, 2016·Virus Evolution·Ben LongdonFrancis M Jiggins
Nov 25, 2017·Frontiers in Immunology·Juris A Grasis
Jan 16, 2016·Molecular Ecology·Simon Y W HoBeth Shapiro
Jul 6, 2018·The Journal of Veterinary Medical Science·Yahiro MukaiKeizo Tomonaga
Oct 30, 2018·The Journal of General Virology·Margus VarjakEsther Schnettler
Oct 12, 2018·Journal of Virology·Mahtab PeyambariMarilyn J Roossinck
Dec 24, 2018·The New Phytologist·Guan-Zhu Han
Jan 14, 2018·Scientific Reports·Seydina Issa DiopFlorian Maumus
Feb 21, 2018·Nature Ecology & Evolution·M Lisandra Zepeda MendozaM P Thomas Gilbert
Apr 3, 2019·Emerging Microbes & Infections·Vincent HouéAnna-Bella Failloux
Apr 21, 2019·Molecular Biology and Evolution·Jade Vincent MembrebePhilippe Lemey
May 10, 2019·Journal of Virology·Jianhua WangGuan-Zhu Han
Aug 9, 2017·Annual Review of Virology·Marilyn J Roossinck, Edelio R Bazán
Oct 11, 2019·Journal of Molecular Evolution·Győző L KajánTibor Papp
Feb 8, 2020·Physiological Reviews·Anna Le TortorecNathalie Dejucq-Rainsford
Jun 11, 2020·The Journal of General Virology·Sarah François, Oliver G Pybus
May 21, 2020·Annual Review of Virology·Emilia C SkirmunttAris Katzourakis
Mar 17, 2017·F1000Research·Charles RupprechtFrancois Meslin
May 19, 2019·Annual Review of Virology·Yong-Zhen ZhangEdward C Holmes
Jun 3, 2016·Journal of Virology·Pakorn Aiewsakun, Aris Katzourakis

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