Episodic radiations in the fly tree of life

Proceedings of the National Academy of Sciences of the United States of America
Brian M WiegmannDavid K Yeates

Abstract

Flies are one of four superradiations of insects (along with beetles, wasps, and moths) that account for the majority of animal life on Earth. Diptera includes species known for their ubiquity (Musca domestica house fly), their role as pests (Anopheles gambiae malaria mosquito), and their value as model organisms across the biological sciences (Drosophila melanogaster). A resolved phylogeny for flies provides a framework for genomic, developmental, and evolutionary studies by facilitating comparisons across model organisms, yet recent research has suggested that fly relationships have been obscured by multiple episodes of rapid diversification. We provide a phylogenomic estimate of fly relationships based on molecules and morphology from 149 of 157 families, including 30 kb from 14 nuclear loci and complete mitochondrial genomes combined with 371 morphological characters. Multiple analyses show support for traditional groups (Brachycera, Cyclorrhapha, and Schizophora) and corroborate contentious findings, such as the anomalous Deuterophlebiidae as the sister group to all remaining Diptera. Our findings reveal that the closest relatives of the Drosophilidae are highly modified parasites (including the wingless Braulidae) of bees...Continue Reading

Associated Datasets

Nov 21, 2012·David K. YeatesBrian M. Wiegmann

References

Aug 29, 2001·Bioinformatics·J P Huelsenbeck, F Ronquist
Aug 13, 2003·Bioinformatics·Fredrik Ronquist, J P Huelsenbeck
Mar 12, 2004·Annual Review of Entomology·David K Yeates, Brian M Wiegmann
Mar 17, 2004·Molecular Phylogenetics and Evolution·John K Moulton, Brian M Wiegmann
Jun 23, 2007·Molecular Phylogenetics and Evolution·Frederik T PetersenBrian M Wiegmann
Nov 9, 2007·Genome Research·Alexander StarkManolis Kellis
Jan 4, 2008·Proceedings of the National Academy of Sciences of the United States of America·Ab Matteen RafiqiUrs Schmidt-Ott
Oct 15, 2008·Systematic Biology·Alexandros StamatakisJacques Rougemont
Feb 7, 2009·Evolution & Development·Benjamin M WheelerKevin J Peterson
Mar 19, 2009·BMC Evolutionary Biology·J Gordon BurleighDouglas E Soltis
Jun 26, 2009·BMC Biology·Brian M WiegmannDavid K Yeates
Jul 28, 2009·Proceedings of the National Academy of Sciences of the United States of America·Michael E AlfaroLuke J Harmon
Dec 25, 2009·Evolution; International Journal of Organic Evolution·Daniel L Rabosky
Mar 23, 2010·Proceedings of the National Academy of Sciences of the United States of America·Stephen A SmithMichael J Donoghue

Citations

Nov 29, 2012·Development Genes and Evolution·Alessandro Minelli, Lorenzo Munari
Apr 19, 2013·Development Genes and Evolution·Karl R WottonEva Jiménez-Guri
Apr 4, 2013·Micron : the International Research and Review Journal for Microscopy·Dong ZhangKai Li
May 18, 2013·Trends in Parasitology·Keira J LucasAlexander S Raikhel
Aug 27, 2013·Trends in Ecology & Evolution·Christopher W Wheat, Niklas Wahlberg
May 11, 2011·Proceedings of the National Academy of Sciences of the United States of America·Kim RoelantsFranky Bossuyt
May 24, 2013·Genome Biology and Evolution·Miguel GaravísAlfredo Villasante
Jun 12, 2012·Molecular Biology and Evolution·Darren J ObbardFrancis M Jiggins
Mar 16, 2013·Molecular Biology and Evolution·Jie BaoGang Wang
Aug 6, 2013·Molecular Biology and Evolution·James E TarverKevin J Peterson
Sep 13, 2013·Molecular Biology and Evolution·Bastian FrommLutz Bachmann
Dec 14, 2011·Annual Review of Entomology·William L MurphyJean-Claude Vala
Feb 26, 2013·BMC Genomics·Eva Jiménez-GuriJohannes Jaeger
Jun 21, 2011·PLoS Currents·Michelle D TrautweinDavid K Yeates
Sep 13, 2012·PLoS Biology·Daniel L RaboskyMichael E Alfaro
May 17, 2014·PLoS Genetics·Josephine A ReinhardtGerald S Wilkinson
Jan 11, 2014·PloS One·Karl R WottonJohannes Jaeger
Jan 11, 2014·PloS One·Eva Jiménez-GuriJohannes Jaeger
Jun 30, 2012·Comparative and Functional Genomics·Gritta TettweilerGreco Hernández
Oct 29, 2013·Annual Review of Entomology·Klaas-Douwe B DijkstraSteffen U Pauls
Oct 29, 2013·Annual Review of Entomology·Stephen L Cameron
Apr 25, 2014·Proceedings. Biological Sciences·Jurriaan M de VosElena Conti
Apr 26, 2014·Science·International Glossina Genome Initiative
Aug 21, 2013·Gene·Fei YangFangneng Huang
Jun 27, 2014·Proceedings. Biological Sciences·Akito Y Kawahara, Jesse W Breinholt
Sep 1, 2014·Genome Biology and Evolution·Majid KazemianSaurabh Sinha
Jan 16, 2013·Annual Review of Entomology·John G Stoffolano, Aaron T Haselton
Sep 29, 2011·Annual Review of Entomology·David W Severson, Susanta K Behura
Dec 14, 2011·Annual Review of Entomology·Michelle D TrautweinDavid K Yeates
Jun 20, 2014·Integrative and Comparative Biology·David P Hughes
Apr 29, 2014·The Journal of Parasitology·Eric J McElroy, I de Buron
Sep 1, 2014·Systematic Biology·Emmanuel F A ToussaintMichael Balke
Oct 29, 2014·Biodiversity Data Journal·Jukka Salmela, Anna Suuronen
Dec 31, 2015·Molecular Biology and Evolution·Ellen O MartinsonJohn H Werren
Sep 17, 2014·Proceedings of the National Academy of Sciences of the United States of America·Chen-Yang CaiDi-Ying Huang
Jan 28, 2015·Proceedings of the National Academy of Sciences of the United States of America·Benjamin Goldman-HuertasNoah K Whiteman
Dec 9, 2015·Molecular Phylogenetics and Evolution·Mirian WattsBrian M Wiegmann
Dec 13, 2012·Journal of Insect Physiology·Jacob T ShreveJeffrey J Stuart
Dec 8, 2015·Evolution; International Journal of Organic Evolution·John A SvedWilliam B Sherwin
May 23, 2012·Molecular Phylogenetics and Evolution·Matthew N KroschAnthony R Clarke
Feb 10, 2012·Arthropod Structure & Development·Harald W Krenn, Horst Aspöck
Feb 22, 2012·Arthropod Structure & Development·Katharina SchneebergRolf G Beutel
Jan 10, 2016·BMC Evolutionary Biology·James L RainfordPeter J Mayhew
Feb 16, 2016·ZooKeys·F Christian Thompson, Thomas Pape
Jan 21, 2016·Proceedings of the National Academy of Sciences of the United States of America·David LabonteWalter Federle
Aug 11, 2015·Journal of Insect Physiology·Monika Gulia-NussMichael R Strand
Jun 20, 2012·Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution·Meghna V PatelMark F A Vanberkum
Jun 1, 2012·Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution·Benedikt HallgrímssonRalph S Marcucio
Sep 13, 2013·Journal of Morphology·Katharina SchneebergRolf G Beutel
Oct 8, 2013·Evolution; International Journal of Organic Evolution·Priscila Chaverri, Gary J Samuels
Oct 1, 2012·Biological Journal of the Linnean Society·Florian KarolyiHarald W Krenn
Jul 22, 2014·Evolution; International Journal of Organic Evolution·Yaowu XingH Peter Linder
Jan 8, 2014·Ecology Letters·Víctor Rosas-GuerreroMauricio Quesada
Jul 3, 2013·The Journal of Comparative Neurology·Marlene BinzerJoachim Schachtner
Oct 9, 2014·Insect Molecular Biology·M K MillsK Michel
Nov 26, 2015·Biology Letters·Joshua M HallJessica L Fox
Apr 3, 2016·Development Genes and Evolution·Daniel Aguilar-HidalgoFernando Casares
Aug 11, 2015·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Camila LorenzLincoln Suesdek
Apr 24, 2015·BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology·Alex T Kalinka
May 2, 2015·Arthropod Structure & Development·René BauernfeindRolf G Beutel
Apr 17, 2012·Insect Biochemistry and Molecular Biology·Robert F MitchellHugh M Robertson
Sep 22, 2012·Molecular Phylogenetics and Evolution·Tong LiHong-wei Chen
Jun 11, 2014·Journal of Neurogenetics·Egemen AgiPeter Robin Hiesinger
Jul 15, 2015·Chromosoma·James M MasonRadmila Capkova Frydrychova
Mar 15, 2015·Nucleic Acids Research·Mary Etna HaacZach N Adelman
Sep 11, 2013·Developmental and Comparative Immunology·Songjie Wang, Brenda T Beerntsen
Sep 28, 2014·Journal of Insect Physiology·Young Min MoonJoseph E O'Tousa
Mar 4, 2015·Biodiversity Data Journal·Thomas PapeYde de Jong
Feb 20, 2015·Proceedings. Biological Sciences·Nathan J KennyJerome H L Hui
Dec 3, 2014·Genomics·Meganathan P RamakodiDavid A Ray
Feb 27, 2016·Parasitology Research·Q K WangDong Zhang
Jan 9, 2015·PLoS Neglected Tropical Diseases·Ryan M YoungEddie W Cupp
Apr 17, 2015·PLoS Biology·Beatriz Vicoso, Doris Bachtrog
Jul 12, 2016·Current Opinion in Genetics & Development·Urs Schmidt-Ott, Jeremy A Lynch
Jul 15, 2016·Integrative and Comparative Biology·Alexandra M Yarger, Jessica L Fox
May 15, 2016·Genesis : the Journal of Genetics and Development·Claudio Roberto SimonNadia Monesi
Aug 26, 2016·Journal of the Royal Society, Interface·Karl KjerRolf G Beutel
Oct 22, 2016·Genome Génome / Conseil National De Recherches Canada·T Fatima MitterboeckSarah J Adamowicz
Sep 30, 2016·Arthropod Structure & Development·Maria FörsterKatharina Schneeberg
Feb 18, 2016·PLoS Neglected Tropical Diseases·Rosaline MachariaDaniel Masiga
Feb 2, 2016·PLoS Genetics·Clément GilbertElisabeth A Herniou
Jan 12, 2017·Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution·Markus Friedrich, Jeffery W Jones
Jan 24, 2017·Neuron·Lucia L Prieto-GodinoRichard Benton
Feb 6, 2017·Arthropod Structure & Development·Sweta AgrawalJessica L Fox
Feb 26, 2016·Scientific Reports·Ana Carolina M JunqueiraStephan C Schuster
Apr 20, 2017·International Journal of Molecular Sciences·Xuankun LiDing Yang
Dec 24, 2014·Toxins·Bjoern Marcus von ReumontRonald A Jenner
Nov 24, 2017·Cold Spring Harbor Symposia on Quantitative Biology·Allan C Spradling
Jul 31, 2018·Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution·Markus FriedrichHamzah Badreddine
Jun 21, 2018·Molecular Biology and Evolution·Quentin Helleu, Mia T Levine
Sep 1, 2016·Nature Communications·Carrie A Whittle, Cassandra G Extavour
Oct 24, 2018·Molecular Biology and Evolution·Amanda M Bonner, R Scott Hawley
Mar 16, 2019·PLoS Genetics·J Sebastian ChahdaJohn R Carlson
Aug 10, 2017·Nature·David HouleThomas F Hansen
Dec 31, 2015·Die Naturwissenschaften·Qingqing ZhangBo Wang
Jun 29, 2012·Nature·Elie Dolgin
Nov 20, 2019·Proceedings of the National Academy of Sciences of the United States of America·Duane D McKennaRolf G Beutel
Nov 5, 2019·Science Advances·Rashmit KaurThomas Hummel
Aug 24, 2019·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Martin J R Hall, Daniel Martín-Vega
Feb 14, 2020·G3 : Genes - Genomes - Genetics·Richard P MeiselJoshua B Benoit
May 22, 2020·Evolution; International Journal of Organic Evolution·Carl E HjelmenJ Spencer Johnston
Mar 8, 2020·Journal of Evolutionary Biology·Patrick T Rohner
Jun 6, 2020·PloS One·Hollister W HerholdDavid A Grimaldi
Mar 25, 2019·Frontiers in Physiology·Marco BonelliMorena Casartelli
Apr 17, 2020·Frontiers in Endocrinology·Gerd GädeHeather G Marco
Sep 25, 2015·Nature Communications·John J WiensNoah K Whiteman
Mar 23, 2017·Biodiversity Data Journal·Jukka Salmela, Levente-Péter Kolcsár
Nov 22, 2017·EvoDevo·Karl R WottonEva Jiménez-Guri
Feb 14, 2019·International Journal of Molecular Sciences·Xiao ZhangDing Yang
Jul 1, 2020·G3 : Genes - Genomes - Genetics·Thomas BrodyWard F Odenwald
Oct 2, 2020·Communications Biology·Alys M Cheatle JarvelaLeslie Pick
Oct 27, 2017·Frontiers in Systems Neuroscience·J Frances KamhiJames F A Traniello
Feb 5, 2019·ZooKeys·Jade SavageJeffrey H Skevington
Oct 31, 2019·Insects·Christopher J Holmes, Joshua B Benoit
Jul 19, 2020·BMC Evolutionary Biology·Lucas Freitas, Mariana F Nery
Jul 21, 2017·Cell Cycle·Emil Peter Thrane Hertz, Jakob Nilsson
Mar 14, 2018·Ecology and Evolution·Paul G BecherJure Piškur
Nov 25, 2020·BMC Evolutionary Biology·Bonnie B BlaimerMatthew L Buffington
Dec 2, 2020·Proceedings of the National Academy of Sciences of the United States of America·Vincent G MartinsonSteve J Perlman
Jan 13, 2021·Proceedings. Biological Sciences·Alexandra M YargerJessica L Fox
Jan 29, 2020·International Journal of Biological Macromolecules·Xin-Yu LiDong Zhang
Jan 22, 2021·Developmental and Comparative Immunology·Samara Rosendo MachadoPascal Miesen
Feb 3, 2021·International Journal of Biological Macromolecules·Liping YanJunqing Li
Dec 1, 2020·Frontiers in Plant Science·John F Tooker, David Giron
Jan 19, 2021·Mitochondrial DNA. Part B, Resources·Shuangmei Ding, Ding Yang
Nov 5, 2020·Insects·Claire L DonaldAlain Kohl
Jan 28, 2021·Genome Biology and Evolution·Cheng PengZhang Ruiling
Aug 12, 2018·Trends in Parasitology·Danny HaelewatersCarl W Dick
Apr 1, 2018·Current Opinion in Insect Science·Brian M Wiegmann, Stephen Richards
Nov 8, 2019·Current Opinion in Insect Science·Andrew D GlossNoah K Whiteman
Dec 13, 2016·Current Opinion in Insect Science·Karl KjerBrian M Wiegmann
Aug 10, 2012·Development·Ab Matteen RafiqiUrs Schmidt-Ott
Apr 30, 2021·Saudi Journal of Biological Sciences·Mohamed G NasserSara A Al-Ashaal

Related Concepts

Biological Adaptation
Bayesian Prediction
Diptera
Biological Evolution
Phylogeny
cDNA Library
Likelihood Functions
Sequence Determinations, DNA
RNA, Small Temporal
Order Coleoptera

Related Feeds

Antimalarial Agents

Antimalarial agents, also known as antimalarials, are designed to prevent or cure malaria. Discover the latest research on antimalarial agents here.

Antimalarial Agents (ASM)

Antimalarial agents, also known as antimalarials, are designed to prevent or cure malaria. Discover the latest research on antimalarial agents here.