Evaluating adipocyte differentiation of bone marrow-derived mesenchymal stem cells by a deep learning method for automatic lipid droplet counting

Computers in Biology and Medicine
Leila HassanlouEffat Alizadeh

Abstract

Stem cells are a group of competent cells capable of self-renewal and differentiating into osteogenic, chondrogenic, and adipogenic lineages. These cells provide the possibility of successfully treating patients. During differentiation into adipose tissues, a large number of lipid droplets normally accumulate in these cells, which can be seen through oil red O staining. Although the oil red O staining technique is regularly used for assessing the differentiation degree, its validity for quantitative studies has not been approved yet. Lipid droplet counting has applications in differentiation works and saves time and costs once being automated. In this research, for proving the differentiation of mesenchymal stem cells (MSCs) into adipocyte tissues, their microscopic images were provided. Then, the microscopic images were segmented into square patches, and the lipid droplets were annotated through single-point annotation. The proposed network, based on deep learning, is a fully convolutional regression network processing an image with a small respective field on it. Finally, this method not only does count the lipid droplets but also generates a count map. The average counting accuracy is 94%, which is higher than that of the st...Continue Reading

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