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Evaluation of de novo transcriptome assemblies from RNA-Seq data

bioRxiv

Jun 13, 2014

Bo LiColin N Dewey

Abstract

De novo RNA-Seq assembly facilitates the study of transcriptomes for species without sequenced genomes, but it is challenging to select the most accurate assembly in this context. To address this challenge, we developed a model-based score, RSEM-EVAL, for evaluating assemblies when the ...read more

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Study
Genome
Advice
Desmosine
Limb Structure
Evaluation
Species
Transcriptome
Ambystoma mexicanum
Entire Limb
51
2
Paper Details
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Evaluation of de novo transcriptome assemblies from RNA-Seq data

bioRxiv

Jun 13, 2014

Bo LiColin N Dewey

PMID: 990006338

DOI: 10.1101/006338

Abstract

De novo RNA-Seq assembly facilitates the study of transcriptomes for species without sequenced genomes, but it is challenging to select the most accurate assembly in this context. To address this challenge, we developed a model-based score, RSEM-EVAL, for evaluating assemblies when the ...read more

Mentioned in this Paper

Study
Genome
Advice
Desmosine
Limb Structure
Evaluation
Species
Transcriptome
Ambystoma mexicanum
Entire Limb
51
2
Paper Details
References
  • References
  • Citations
  • finger pointing at paper

    References currently unavailable

    We're still populating references for this paper, please check back later.
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