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Evaluation of short read metagenomic assembly

BMC Genomics

Oct 26, 2011

Anveshi Charuvaka, Huzefa Rangwala

Abstract

Metagenomic assembly is a challenging problem due to the presence of genetic material from multiple organisms. The problem becomes even more difficult when short reads produced by next generation sequencing technologies are used. Although whole genome assemblers are not designed to asse...read more

Mentioned in this Paper

In Silico
Alkalescens-Dispar Group
Abnormal Fragmented Structure
Genome
Computer Graphics
Metagenome
Ncbi Taxonomy
Genome Assembly Sequence
Phylogeny
Computer Programs and Programming
2
126
1
Paper Details
References
  • References33
  • Citations28
1234
  • References33
  • Citations28
123

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Evaluation of short read metagenomic assembly

BMC Genomics

Oct 26, 2011

Anveshi Charuvaka, Huzefa Rangwala

PMID: 21989307

DOI: 10.1186/1471-2164-12-s2-s8

Abstract

Metagenomic assembly is a challenging problem due to the presence of genetic material from multiple organisms. The problem becomes even more difficult when short reads produced by next generation sequencing technologies are used. Although whole genome assemblers are not designed to asse...read more

Mentioned in this Paper

In Silico
Alkalescens-Dispar Group
Abnormal Fragmented Structure
Genome
Computer Graphics
Metagenome
Ncbi Taxonomy
Genome Assembly Sequence
Phylogeny
Computer Programs and Programming
2
126
1

Feeds With Similar Papers

Structural Biology: Biophysics

Structural Biology: Biophysics describes the study of structural biology using various biophysical techiniques such as imaging, computational modeling, etc. Discover the latest research on structrual biology here.

Genetic Speciation

Speciation depends on the genetic evolution of reproductive barriers that allow populations to diverge from each other. Discover the latest research on Genetic Speciation here.

Related Papers

Genome Research

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

Genome ResearchMarch 20, 2008
Daniel R Zerbino, Ewan Birney
Bioinformatics

Meta-IDBA: a de Novo assembler for metagenomic data

BioinformaticsJune 21, 2011
Yu PengFrancis Y L Chin
Paper Details
References
  • References33
  • Citations28
1234
  • References33
  • Citations28
123

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