Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae

Genome Biology and Evolution
Raquel BarbosaJosé Paulo Sampaio

Abstract

The natural biology of Saccharomyces cerevisiae, the best known unicellular model eukaryote, remains poorly documented and understood although recent progress has started to change this situation. Studies carried out recently in the Northern Hemisphere revealed the existence of wild populations associated with oak trees in North America, Asia, and in the Mediterranean region. However, in spite of these advances, the global distribution of natural populations of S. cerevisiae, especially in regions were oaks and other members of the Fagaceae are absent, is not well understood. Here we investigate the occurrence of S. cerevisiae in Brazil, a tropical region where oaks and other Fagaceae are absent. We report a candidate natural habitat of S. cerevisiae in South America and, using whole-genome data, we uncover new lineages that appear to have as closest relatives the wild populations found in North America and Japan. A population structure analysis revealed the penetration of the wine genotype into the wild Brazilian population, a first observation of the impact of domesticated microbe lineages on the genetic structure of wild populations. Unexpectedly, the Brazilian population shows conspicuous evidence of hybridization with an A...Continue Reading

References

Jun 1, 1995·Journal of Industrial Microbiology·A Vaughan-Martini, A Martini
Oct 18, 2000·International Journal of Systematic and Evolutionary Microbiology·G I NaumovI N Roberts
Apr 27, 2002·Science·Peter R Grant, B Rosemary Grant
Jul 8, 2003·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·S VilanovaM L Badenes
Mar 17, 2004·Genetics·Louise J JohnsonAustin Burt
Mar 20, 2004·Antonie van Leeuwenhoek·Maurizio CianiAlessandro Martini
Feb 1, 2005·Frontiers in Zoology·Jürgen Heinze, Diethard Tautz
Jun 28, 2005·Nucleic Acids Research·Mario Stanke, Burkhard Morgenstern
Nov 29, 2005·PLoS Genetics·Akira MutoHerwig Baier
Sep 14, 2006·BMC Bioinformatics·Stephan HutterJulio Rozas
Feb 20, 2007·Current Biology : CB·Heidi A KuehnePaul D Sniegowski
Nov 29, 2007·Bioinformatics·Gabriel Moreno-Hagelsieb, Kristen Latimer
Feb 13, 2009·Nature·Gianni LitiEdward J Louis
May 20, 2009·Bioinformatics·Heng Li, Richard Durbin
May 30, 2009·PLoS Computational Biology·Robert K BradleyLior Pachter
Jun 10, 2009·Bioinformatics·Heng LiUNKNOWN 1000 Genome Project Data Processing Subgroup
Dec 17, 2009·BMC Bioinformatics·Christiam CamachoThomas L Madden
Jul 6, 2010·Trends in Ecology & Evolution·Michael L Arnold, Noland H Martin
May 3, 2011·PloS One·Leonidas Salichos, Antonis Rokas
Aug 30, 2011·Proceedings of the National Academy of Sciences of the United States of America·Diego LibkindJosé Paulo Sampaio
Nov 24, 2011·Nucleic Acids Research·J Michael CherryEdith D Wong
Apr 18, 2012·Journal of Computational Biology : a Journal of Computational Molecular Cell Biology·Anton BankevichPavel A Pevzner
Feb 2, 2013·BMC Genomics·Gianni LitiConrad A Nieduszynski
May 15, 2013·PLoS Genetics·Matthew B HuffordJeffrey Ross-Ibarra
Oct 15, 2013·G3 : Genes - Genomes - Genetics·Gareth A CromieJustin C Fay
Nov 19, 2013·Environmental Microbiology·Laura TreuStefano Campanaro
Jan 10, 2014·Proceedings. Biological Sciences·Jean-Baptiste LeducqChristian R Landry
Jan 16, 2014·Molecular Biology and Evolution·Anders BergströmGianni Liti
Apr 4, 2014·Bioinformatics·Anthony M BolgerBjoern Usadel
Apr 23, 2014·Proceedings of the National Academy of Sciences of the United States of America·Fiona B MarshallJosé M Capriles
May 23, 2014·Current Biology : CB·Jian BingFeng-Yan Bai
Jun 3, 2014·Nature Communications·Pedro AlmeidaJosé Paulo Sampaio
Sep 23, 2014·Yeast·Primrose J Boynton, Duncan Greig
Mar 1, 2015·FEMS Yeast Research·Matthew R Goddard, Duncan Greig
Aug 8, 2015·Molecular Ecology·Pedro AlmeidaJosé Paulo Sampaio
Aug 31, 2016·Nature Microbiology·Jean-Baptiste LeducqChristian R Landry

❮ Previous
Next ❯

Citations

Oct 26, 2016·Current Biology : CB·Margarida GonçalvesJosé Paulo Sampaio
Oct 30, 2016·FEMS Yeast Research·Velimir GayevskiyMatthew R Goddard
Apr 4, 2017·Molecular Biology and Evolution·Caiti S Smukowski HeilMaitreya J Dunham
Apr 27, 2017·Molecular Biology and Evolution·Jean-Baptiste LeducqChristian R Landry
Jul 18, 2017·Nature Reviews. Genetics·Souhir MarsitChristian R Landry
Jul 10, 2018·Genome Biology and Evolution·Raquel BarbosaJosé Paulo Sampaio
Mar 13, 2019·Environmental Microbiology·Estéfani García-RíosJosé M Guillamón
Jul 28, 2019·FEMS Microbiology Letters·Suéllen P H AzambujaRosana Goldbeck
Feb 23, 2020·PLoS Genetics·Wioletta CzajaCasey M Bergman
Mar 25, 2020·International Journal of Systematic and Evolutionary Microbiology·Juliana D MoreiraCarlos A Rosa
Sep 17, 2019·PLoS Genetics·Caiti S Smukowski HeilMaitreya J Dunham
Mar 21, 2020·FEMS Yeast Research·Haya Alsammar, Daniela Delneri
Sep 6, 2020·Brazilian Journal of Microbiology : [publication of the Brazilian Society for Microbiology]·Bruno A S SantosRosana Goldbeck
Jul 12, 2017·G3 : Genes - Genomes - Genetics·Viranga Tilakaratna, Douda Bensasson
Jul 14, 2018·Nature Communications·Shou-Fu DuanFeng-Yan Bai
Dec 1, 2020·Molecular Biology and Evolution·Rohan DandageChristian R Landry
Nov 13, 2020·Nature·Melania D'AngioloGianni Liti
Mar 27, 2021·Evolutionary Applications·Carla BautistaChristian R Landry
Feb 13, 2017·Molecular Phylogenetics and Evolution·David PerisEladio Barrio
Sep 15, 2021·Proceedings of the National Academy of Sciences of the United States of America·Samina NaseebDaniela Delneri

❮ Previous
Next ❯

Datasets Mentioned

BETA
PRJEB11698

Methods Mentioned

BETA
two hybrid

Software Mentioned

SPAdes
RAxML
SMALT
MEGA
STRUCTURE
dwgsim
Variscan
SAMtools
BLAST
FSA

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.