Evolution and diversification of Group 1 [NiFe] hydrogenases. Is there a phylogenetic marker for O(2)-tolerance?

Biochimica Et Biophysica Acta
Maria-Eirini PandeliaWolfgang Nitschke

Abstract

Group 1 hydrogenases are periplasmic enzymes and are thus strongly affected by the "outside world" the cell experiences. This exposure has brought about an extensive heterogeneity in their cofactors and redox partners. Whereas in their majority they are very O(2)-sensitive, several enzymes of this group have been recently reported to be O(2)-tolerant. Structural and biochemical studies have shown that this O(2)-tolerance is conferred by the presence of an unusual iron-sulfur cofactor with supernumerary cysteine ligation (6 instead of 4 Cys, hence called '6C cluster'). This atypical cluster coordination affords redox plasticity (i.e. two-redox transitions), unprecedented for this type of cofactors and likely involved in resistance to O(2). Genomic screening and phylogenetic tree reconstruction revealed that 6C hydrogenases form a monophyletic clade and are unexpectedly widespread among bacteria. However, several other well-defined clades are observed, which indicate early diversification of the enzyme into different subfamilies. The various idiosyncrasies thereof are shown to comply with a very simple rule: phylogenetic grouping of hydrogenases directly correlates with their specific functions and hence biochemical characteristi...Continue Reading

References

Feb 26, 1992·Biochimica Et Biophysica Acta·J M CoremansS P Albracht
Oct 5, 1990·Journal of Molecular Biology·S F AltschulD J Lipman
Feb 16, 1995·Nature·A VolbedaJ C Fontecilla-Camps
Dec 11, 1999·Nucleic Acids Research·H M BermanP E Bourne
Feb 22, 2003·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Frauke BaymannWolfgang Nitschke
Apr 3, 2003·Chembiochem : a European Journal of Chemical Biology·Mario TietzeUwe Beifuss
Aug 12, 2003·Nature Structural Biology·Michela G BerteroNatalie C J Strynadka
Jul 10, 2004·Journal of Biological Inorganic Chemistry : JBIC : a Publication of the Society of Biological Inorganic Chemistry·Boris BleijlevensSimon P J Albracht
Feb 14, 2006·Science·Leonid A Sazanov, Philip Hinchliffe
Mar 4, 2006·Science·Francesca D CiccarelliPeer Bork
Nov 4, 2006·Journal of Biological Inorganic Chemistry : JBIC : a Publication of the Society of Biological Inorganic Chemistry·Olga SchröderWolfgang Lubitz
Oct 12, 2007·Chemical Reviews·Paulette M Vignais, Bernard Billoud
Jan 15, 2008·Archives of Biochemistry and Biophysics·Marc Fontecave, Sandrine Ollagnier-de-Choudens
Jun 10, 2008·Nature Structural & Molecular Biology·Mika JormakkaSo Iwata
Jul 1, 2008·Nature Reviews. Microbiology·Rudolf K ThauerReiner Hedderich
Jul 30, 2008·Journal of the American Chemical Society·Gabrielle GoldetFraser A Armstrong
Nov 15, 2008·Trends in Biochemical Sciences·Anne-Lise DucluzeauWolfgang Nitschke
Nov 21, 2008·The FEBS Journal·Lívia S Palágyi-MészárosKornél L Kovács
Mar 24, 2009·The Journal of Biological Chemistry·Miguel SagguFriedhelm Lendzian
May 12, 2009·Proceedings of the National Academy of Sciences of the United States of America·Barbara Schoepp-CothenetWolfgang Nitschke
Nov 18, 2009·The Journal of Biological Chemistry·Michael J LukeyFraser A Armstrong
Nov 26, 2009·Journal of Bacteriology·Brian C BrajcichJennifer N Shepherd
Jan 29, 2010·BioEssays : News and Reviews in Molecular, Cellular and Developmental Biology·Nick LaneWilliam Martin
Feb 5, 2010·Photosynthesis Research·W NitschkeF Baymann
Jan 25, 2011·Applied and Environmental Microbiology·Walter A VargasQing Xu
Mar 12, 2011·Current Opinion in Chemical Biology·Eric M ShepardJohn W Peters
Mar 30, 2011·Proceedings of the National Academy of Sciences of the United States of America·Maria-Eirini PandeliaWolfgang Lubitz
Mar 21, 2012·Proceedings of the National Academy of Sciences of the United States of America·Anne VolbedaJuan C Fontecilla-Camps

❮ Previous
Next ❯

Citations

Dec 26, 2012·Proceedings of the National Academy of Sciences of the United States of America·Maria-Eirini PandeliaWolfgang Lubitz
Jun 12, 2013·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Wolfgang Nitschke, Michael J Russell
Feb 24, 2016·Frontiers in Microbiology·Moritz Hansen, Mirjam Perner
Oct 6, 2015·Journal of the American Chemical Society·Patrick KwanAnne K Jones
Sep 18, 2012·Biochimica Et Biophysica Acta·Barbara Schoepp-CothenetWolfgang Nitschke
Feb 13, 2013·Biochimica Et Biophysica Acta·Hannah S ShafaatWolfgang Lubitz
Sep 26, 2013·Biochemical Society Transactions·Matthias Stein, Sandeep Kaur-Ghumaan
Dec 24, 2013·Biochimica Et Biophysica Acta·Anne-Lise DucluzeauWolfgang Nitschke
Mar 26, 2014·Biochimica Et Biophysica Acta·S S VenceslauI A C Pereira
Jun 9, 2015·Interface Focus·Nicholas CoxWolfgang Lubitz
Mar 5, 2013·Biochimica Et Biophysica Acta·Wolfgang NitschkeMichael J Russell
Sep 18, 2012·Biochimica Et Biophysica Acta·Fabian GreinInês A C Pereira
Oct 16, 2012·Biochimica Et Biophysica Acta·Elbert Branscomb, Michael J Russell
Apr 5, 2016·Biochimica Et Biophysica Acta·Bruno C MarreirosManuela M Pereira
May 12, 2017·Physiologia Plantarum·Daria V DibrovaArmen Y Mulkidjanian
Oct 19, 2017·FEMS Microbiology Ecology·Thomas KruseHauke Smidt
Feb 21, 2016·Applied and Environmental Microbiology·Anne-Christin Kreutzmann, Heide N Schulz-Vogt
Nov 15, 2018·Chemical Society Reviews·Rhiannon M EvansFraser A Armstrong
Jan 20, 2019·Applied and Environmental Microbiology·Sarah Piché-Choquette, Philippe Constant
Mar 21, 2019·Open Biology·Tanai Cardona
Jan 17, 2013·Nature Reviews. Microbiology·Johannes FritschBärbel Friedrich
Apr 29, 2015·Mikrobiologiia·A A Tsygankov, A N Khusnutdinova
Feb 11, 2016·Biochemical Society Transactions·Lindsey A Flanagan, Alison Parkin
Jan 31, 2020·Microbiology and Molecular Biology Reviews : MMBR·Stéphane L BenoitChris Greening
Aug 5, 2017·Environmental Microbiology·Stefan DyksmaMarc Mussmann
Jan 6, 2021·Nature Microbiology·Sean K BayChris Greening
Jun 30, 2021·Nature Reviews. Microbiology·Zheng Lu, James A Imlay
Mar 25, 2014·Chemical Reviews·Wolfgang LubitzEdward Reijerse
May 21, 2015·The Journal of Physical Chemistry. B·Nicolas KaefferVincent Artero

❮ Previous
Next ❯

Related Concepts

Related Feeds

Archaeogenetics

Recent advances in genomic sequencing has led to the discovery of new strains of Archaea and shed light on their evolutionary history. Discover the latest research on Archaeogenetics here.

Related Papers

Current Opinion in Chemical Biology
Alison Parkin, Frank Sargent
Proceedings of the National Academy of Sciences of the United States of America
Maria-Eirini PandeliaWolfgang Lubitz
Proceedings of the National Academy of Sciences of the United States of America
Anne VolbedaJuan C Fontecilla-Camps
Biochemical Society Transactions
Matthias Stein, Sandeep Kaur-Ghumaan
© 2021 Meta ULC. All rights reserved