Evolution, dispersal and replacement of American genotype dengue type 2 viruses in India (1956-2005): selection pressure and molecular clock analyses

The Journal of General Virology
Sandeep R P KumarDevendra T Mourya

Abstract

This study reports the phylogeny, selection pressure, genotype replacement and molecular clock analyses of many previously unstudied dengue type 2 virus (DENV-2) strains, isolated in India over a time span of almost 50 years (1956-2005). Analysis of complete envelope (E) gene sequences of 37 strains of DENV-2 from India, together with globally representative strains, revealed that the American genotype, which circulated predominantly in India during the pre-1971 period, was then replaced by the Cosmopolitan genotype. Two previously unreported amino acid residues, one in the American (402I) and one in the Cosmopolitan (126K) genotypes, known to be involved functionally in the cellular tropism of the virus, were shown to be under positive selection pressure. The rate of nucleotide substitution estimated for DENV-2 was 6.5x10(-4) substitutions per site year(-1), which is comparable with earlier estimates. The time to the most recent common ancestor of the pre-1971 Indian strains and the American genotype was estimated to be between 73 and 100 years (1905-1932), which correlates with the historical record of traffic between India and South America and suggests transportation of the virus from the Americas. Post-1971 Indian isolates...Continue Reading

References

Jan 1, 1978·American Journal of Medical Genetics·K GladstienM A Spence
Jan 1, 1990·Annual Review of Microbiology·T J ChambersC M Rice
Jun 1, 1989·The American Journal of Tropical Medicine and Hygiene·B L InnisC Hemachudha
Jan 23, 1996·Proceedings of the National Academy of Sciences of the United States of America·P M ZanottoE C Holmes
Oct 1, 1996·The American Journal of Tropical Medicine and Hygiene·C G HayesD M Watts
Jul 1, 1997·The American Journal of Tropical Medicine and Hygiene·N SittisombutN Maneekarn
Dec 17, 1998·Tropical Medicine & International Health : TM & IH·A AltafS Fisher-Hoch
Jan 27, 1999·Bioinformatics·D Posada, K A Crandall
Mar 31, 1999·Epidemiology and Infection·O ChareonsookN Silarug
May 11, 1999·Journal of Virology·K C LeitmeyerR Rico-Hesse
Aug 25, 1999·Emerging Infectious Diseases·L DarP Seth
Sep 9, 1999·The Journal of Infectious Diseases·U B SinghP Seth
Feb 9, 2000·Trends in Microbiology·E C Holmes, S S Burch
Mar 9, 2000·Journal of Virology·E WangS C Weaver
May 24, 2001·Molecular Biology and Evolution·M A SuchardJ S Sinsheimer
Jun 21, 2002·The Journal of General Virology·S Susanna TwiddyEdward C Holmes
Jan 10, 2003·Molecular Biology and Evolution·S Susanna TwiddyAndrew Rambaut
Mar 14, 2003·Journal of Virology·Raymond Cologna, Rebeca Rico-Hesse
Jun 12, 2003·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Edward C Holmes, S Susanna Twiddy
Aug 13, 2003·Bioinformatics·Fredrik Ronquist, John P Huelsenbeck
Aug 30, 2003·Journal of Travel Medicine·Mingchang SongNorman Gratz
Jan 1, 1952·The American Journal of Tropical Medicine and Hygiene·A B SABIN
Apr 14, 2004·Tropical Medicine & International Health : TM & IH·S C TewariA Gajanana
Jun 5, 2004·International Journal of Technology Assessment in Health Care·Cyril Chantler
Jul 21, 2004·Briefings in Bioinformatics·Sudhir KumarMasatoshi Nei
Aug 28, 2004·Journal of Medical Virology·Paban Kumar DashAsha Mukul Jana
Sep 7, 2004·Medical and Veterinary Entomology·N G Gratz
Dec 23, 2004·Journal of Virology·Raymond ColognaRebeca Rico-Hesse
Feb 17, 2005·Bioinformatics·Sergei L Kosakovsky Pond, Simon D W Frost
May 11, 2006·PLoS Biology·Alexei J DrummondAndrew Rambaut
Jun 8, 2007·Journal of Virology·Nikos VasilakisScott C Weaver
Nov 13, 2007·BMC Evolutionary Biology·Alexei J Drummond, Andrew Rambaut
Apr 2, 2008·Transactions of the Royal Society of Tropical Medicine and Hygiene·Mawlouth DialloAmadou Alpha Sall
Dec 1, 1946·Transactions of the Royal Society of Tropical Medicine and Hygiene·I M MACKERRAS

❮ Previous
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Citations

Feb 24, 2012·Transactions of the Royal Society of Tropical Medicine and Hygiene·Anita ChakravartiChristine Luxemburger
Aug 3, 2010·PloS One·Camila Malta RomanoClaudio Sergio Pannuti
Aug 13, 2013·PloS One·Camila Malta RomanoEsper Georges Kallas
Apr 14, 2012·Tropical Medicine and Health·Eiji Konishi
Jan 5, 2011·Emerging Infectious Diseases·Kate L McElroyJorge L Muñoz-Jordán
Oct 14, 2011·Viruses·Rubing Chen, Nikos Vasilakis
May 5, 2011·Journal of Travel Medicine·Cristina DomingoAntonio Tenorio
Jun 11, 2014·The Journal of General Virology·John H-O Pettersson, Omar Fiz-Palacios
Jun 4, 2014·Journal of Medical Virology·Gitika MishraMastan Singh
Oct 28, 2014·Microbiology and Immunology·Nazia AfreenShama Parveen
Jul 15, 2015·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Sneha SinghEaswaran Sreekumar
Aug 15, 2012·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·J A PatilD Cecilia
Feb 12, 2013·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Yan Sun, Shengli Meng
Jun 3, 2011·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·J A PatilD Cecilia
Mar 26, 2013·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Biswadeep DasRupenangshu K Hazra
Apr 8, 2015·The American Journal of Tropical Medicine and Hygiene·Lee-Ching NgChong Chee Kheong
Jun 24, 2015·The American Journal of Tropical Medicine and Hygiene·Rebekah C KadingBarry R Miller
May 26, 2017·Tropical Medicine & International Health : TM & IH·Manish Chandra ChoudharyPragya Agarwala
Sep 14, 2016·Biomédica : revista del Instituto Nacional de Salud·Fernando RossoRobinson Pacheco
Aug 22, 2013·Current Opinion in Infectious Diseases·Stephen J Thomas, Timothy P Endy
Feb 15, 2019·Journal of Clinical Microbiology·Gilberto A SantiagoJorge L Muñoz-Jordan
Jan 1, 2014·WHO South-East Asia Journal of Public Health·Dayaraj Cecilia
Aug 20, 2019·Indian Journal of Medical Microbiology·Pradip V BardeMahendra J Ukey
Jan 1, 2019·Indian Journal of Medical Microbiology·Pradip V BardeMahendra J Ukey
Mar 16, 2021·Frontiers in Cellular and Infection Microbiology·Yuan FangEmad I M Khater
Apr 28, 2021·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Praveen RaiIddya Karunasagar
Jul 1, 2021·Scientific Reports·Surya Pavan YenamandraHapuarachchige Chanditha Hapuarachchi
Aug 25, 2021·International Journal of Infectious Diseases : IJID : Official Publication of the International Society for Infectious Diseases·K AlagarasuUNKNOWN VRDL Team
Aug 28, 2021·Frontiers in Cellular and Infection Microbiology·S Gowri SankarA Alwin Prem Anand

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