Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: a case of hidden complexity.

Biology Direct
Natalya Yutin, Eugene V Koonin

Abstract

Eukaryotic Nucleo-Cytoplasmic Large DNA Viruses (NCLDV) encode most if not all of the enzymes involved in their DNA replication. It has been inferred that genes for these enzymes were already present in the last common ancestor of the NCLDV. However, the details of the evolution of these genes that bear on the complexity of the putative ancestral NCLDV and on the evolutionary relationships between viruses and their hosts are not well understood. Phylogenetic analysis of the ATP-dependent and NAD-dependent DNA ligases encoded by the NCLDV reveals an unexpectedly complex evolutionary history. The NAD-dependent ligases are encoded only by a minority of NCLDV (including mimiviruses, some iridoviruses and entomopoxviruses) but phylogenetic analysis clearly indicated that all viral NAD-dependent ligases are monophyletic. Combined with the topology of the NCLDV tree derived by consensus of trees for universally conserved genes suggests that this enzyme was represented in the ancestral NCLDV. Phylogenetic analysis of ATP-dependent ligases that are encoded by chordopoxviruses, most of the phycodnaviruses and Marseillevirus failed to demonstrate monophyly and instead revealed an unexpectedly complex evolutionary trajectory. The ligases o...Continue Reading

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Citations

Feb 1, 2012·Parasitology Research·Patrick Scheid, Rafael Schwarzenberger
Jun 17, 2010·Intervirology·Eugene V Koonin, Natalya Yutin
Aug 16, 2012·Virology Journal·Natalya Yutin, Eugene V Koonin
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May 5, 2020·Nucleic Acids Research·Adele Williamson, Hanna-Kirsti S Leiros
May 5, 2016·Anais Da Academia Brasileira De Ciências·Rodrigo StaggemeierFernando R Spilki
May 6, 2019·Viruses·Nadav Brandes, Michal Linial
Dec 28, 2019·Viruses·James L Van EttenDavid D Dunigan
Nov 26, 2020·Viruses·Tsu-Wang SunChuan Ku

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Software Mentioned

BLASt
PSIBLAST
PSI
BLASTP
TreeFinder
MUSCLE

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