Evolution of SHORT VEGETATIVE PHASE (SVP) genes in Rosaceae: Implications of lineage-specific gene duplication events and function diversifications with respect to their roles in processes other than bud dormancy

The Plant Genome
Jinyi LiuChangquan Wang

Abstract

MADS-box genes that are homologous to Arabidopsis SHORT VEGETATIVE PHASE (SVP) have been shown to play key roles in the regulation of bud dormancy in perennial species, particularly in the deciduous fruit trees of Rosaceae. However, their evolutionary profiles in Rosaceae have not yet been analyzed systematically. Here, The SVP genes were found to be significantly expanded in Rosaceae when compared with annual species from Brassicaceae. Phylogenetic analysis showed that Rosaceae SVP genes could be classified into five clades, namely, SVP1, SVP2-R1, SVP2-R2, SVP2-R3 and SVP3. The SVP1 clade genes were retained in most of the species, whereas the SVP2-R2 and SVP2-R3 clades were found to be Maleae- and Amygdaleae-specific (Both of the lineages belong to Amygdaloideae), respectively, and SVP2-R1 was Rosoideae-specific in Rosaceae. Furthermore, 10 lineage-specific gene duplication (GD) events (GD1-10) were proposed for the expansion of SVP genes, suggesting that the expansion and divergence of Rosaceae SVP genes were mainly derived by lineage-specific manner during evolution. Moreover, tandem and segmental duplications were the major reasons for the expansion of SVP genes, and interestingly, tandem duplications, a well-known evoluti...Continue Reading

References

Oct 6, 2000·Molecular Biology and Evolution·A BeckerG Theissen
Nov 5, 2002·Nature Reviews. Genetics·Victoria E Prince, F Bryan Pickett
Jun 3, 2004·Genome Research·Gavin E CrooksSteven E Brenner
Dec 1, 2004·Annual Review of Genetics·John S Taylor, Jeroen Raes
Sep 1, 1964·Plant Physiology·S J Wellensiek
Apr 10, 2007·Trends in Plant Science·Antje Rohde, Rishikesh P Bhalerao
Aug 28, 2007·Nature·Olivier JaillonUNKNOWN French-Italian Public Consortium for Grapevine Genome Characterization
Apr 9, 2008·Journal of Experimental Botany·Cristina Madeira Alexandre, Lars Hennig
Oct 17, 2008·Genome Génome / Conseil National De Recherches Canada·Fabrice FoucherLaurence Hibrand-Saint Oyant
Apr 21, 2009·Molecular Biology and Evolution·Morgan N PriceAdam P Arkin
Jun 30, 2009·BMC Plant Biology·Sergio JiménezDouglas G Bielenberg
Apr 23, 2010·The Plant Journal : for Cell and Molecular Biology·Richard Amasino
Jun 11, 2010·Proceedings of the National Academy of Sciences of the United States of America·Shinichiro AikawaHiroshi Kudoh
Dec 1, 2010·Proceedings of the National Academy of Sciences of the United States of America·Haiying YuJianchu Xu
Jan 25, 2012·The Plant Journal : for Cell and Molecular Biology·Zhen TaoHao Yu
May 2, 2012·Journal of Genetics and Genomics = Yi Chuan Xue Bao·Chiara A Airoldi, Brendan Davies
Jan 19, 2013·Molecular Biology and Evolution·Kazutaka Katoh, Daron M Standley
Apr 27, 2013·Cold Spring Harbor Symposia on Quantitative Biology·T S ReamR M Amasino
Aug 10, 2013·Journal of Experimental Botany·Takeshi KurokuraTimo Hytönen
Oct 10, 2013·Molecular Biology and Evolution·Bo Xu, Ziheng Yang
Feb 11, 2014·Current Opinion in Plant Biology·Laju K PaulChristiaan van der Schoot
Feb 14, 2015·Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution·Lydia Gramzow, Günter Theißen
Mar 24, 2016·Molecular Biology and Evolution·Sudhir KumarKoichiro Tamura
Oct 21, 2016·Plant Physiology·Frédéric BouchéRichard M Amasino
Jun 15, 2017·Frontiers in Plant Science·Fei ChenLiangsheng Zhang
Jul 12, 2017·Annual Review of Cell and Developmental Biology·Charles Whittaker, Caroline Dean
Oct 27, 2018·Genome Biology and Evolution·Xing LiuLiangsheng Zhang

❮ Previous
Next ❯

Citations

Sep 5, 2021·The New Phytologist·Vítor da Silveira FalavignaFernando Andrés

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.

Related Papers

Pathophysiology : the Official Journal of the International Society for Pathophysiology
Yanjie HeWeihua Dong
Qualitative Health Research
B FrenchICONS project team and the ICONS Patient, Public and Carer Involvement Groups
© 2021 Meta ULC. All rights reserved