Expanded inverted repeat region with large scale inversion in the first complete plastid genome sequence of Plantago ovata.

Scientific Reports
Sajjad AsafAhmed Al-Harrasi

Abstract

Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report the first complete plastome genome of P. ovata and comparison with previously published genomes of related species from Plantaginaceae. The results revealed that P. ovata plastome size was 162,116 bp and that it had typical quadripartite structure containing a large single copy region of 82,084 bp and small single copy region of 5,272 bp. The genome has a markedly higher inverted repeat (IR) size of 37.4 kb, suggesting large-scale inversion of 13.8 kb within the expanded IR regions. In addition, the P. ovata plastome contains 149 different genes, including 43 tRNA, 8 rRNA, and 98 protein-coding genes. The analysis revealed 139 microsatellites, of which 71 were in the non-coding regions. Approximately 32 forward, 34 tandem, and 17 palindromic repeats were detected. The complete genome sequences, 72 shared genes, matK gene, and rbcL gene from related species generated the same phylogenetic signals, and phylogenetic analysis revealed that P. ovata formed a single clade with P. maritima and P. media. The divergence time estimation as employed in BEAST revealed that P. ovata ...Continue Reading

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Citations

Dec 12, 2020·Saudi Journal of Biological Sciences·Satish MauryaSoo-Yong Kim
May 11, 2021·Physiology and Molecular Biology of Plants : an International Journal of Functional Plant Biology·Bruno Cesar RossiniCelso Luis Marino

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Methods Mentioned

BETA
PCR

Software Mentioned

Tandem Repeats Finder
MEGA
mVISTA
SE
BLAST
CLC Genomics Workbench
BLASTN
TREEANNOTATOR
Trimmomatic
SPADES

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