Exploiting Genetic Information to Trace Plant Virus Dispersal in Landscapes

Annual Review of Phytopathology
Coralie PicardGaël Thébaud

Abstract

During the past decade, knowledge of pathogen life history has greatly benefited from the advent and development of molecular epidemiology. This branch of epidemiology uses information on pathogen variation at the molecular level to gain insights into a pathogen's niche and evolution and to characterize pathogen dispersal within and between host populations. Here, we review molecular epidemiology approaches that have been developed to trace plant virus dispersal in landscapes. In particular, we highlight how virus molecular epidemiology, nourished with powerful sequencing technologies, can provide novel insights at the crossroads between the blooming fields of landscape genetics, phylogeography, and evolutionary epidemiology. We present existing approaches and their limitations and contributions to the understanding of plant virus epidemiology.

References

Feb 24, 1977·Nature·F SangerM Smith
Apr 1, 1989·Proceedings of the National Academy of Sciences of the United States of America·M OritaT Sekiya
May 1, 1989·Journal of Virology·E Rodríguez-CerezoF García-Arenal
Sep 26, 2001·Applied and Environmental Microbiology·J B HughesB J Bohannan
Nov 10, 2001·Annual Review of Phytopathology·F García-ArenalJ M Malpica
Nov 22, 2001·Proceedings of the National Academy of Sciences of the United States of America·D Posada, K A Crandall
Nov 28, 2002·Molecular Ecology·I DupanloupL Excoffier
Feb 20, 2003·Proceedings. Biological Sciences·D T HaydonM E J Woolhouse
Oct 3, 2003·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Mustapha BousalemKieko T Natsuaki
Jan 17, 2004·Science·Bryan T GrenfellEdward C Holmes
May 11, 2006·PLoS Biology·Alexei J DrummondAndrew Rambaut
May 17, 2006·Trends in Ecology & Evolution·Richard S OstfeldFelicia Keesing
Jun 21, 2006·Annual Review of Phytopathology·D FargetteJ M Thresh
Oct 5, 2006·Evolution; International Journal of Organic Evolution·Brad H McRae
Oct 10, 2006·Advances in Virus Research·M J JegerF Van den Bosch
Sep 11, 2007·Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences·Christopher A Gilligan
Nov 1, 2007·Proceedings of the National Academy of Sciences of the United States of America·Benoît MouryRachid Senoussi
Jan 31, 2008·Proceedings. Biological Sciences·Eleanor M CottamDaniel T Haydon
Mar 6, 2008·Nature Reviews. Genetics·Siobain DuffyEdward C Holmes
Apr 29, 2008·Preventive Veterinary Medicine·Erin E ReesBradley N White
Nov 29, 2008·Molecular Ecology·Rodrigo P P AlmeidaPatrick O'Grady
Mar 13, 2009·PLoS Biology·Katie HampsonAndy Dobson
Jul 1, 2009·Nature Reviews. Genetics·Oliver G Pybus, Andrew Rambaut
Sep 26, 2009·PLoS Computational Biology·Philippe LemeyMarc A Suchard
Nov 3, 2009·Molecular Ecology·Gilles GuillotAlain C Frantz
Nov 6, 2009·The Journal of General Virology·A J GibbsM J Gibbs
Nov 13, 2009·The Journal of General Virology·Kazusato OhshimaAdrian J Gibbs
Mar 6, 2010·Molecular Biology and Evolution·Philippe LemeyMarc A Suchard
Jul 14, 2010·Molecular Ecology·Roman Biek, Leslie A Real
Jul 28, 2010·Journal of Virology·Rafael SanjuánRobert Belshaw
Sep 25, 2010·Trends in Ecology & Evolution·Erik W BloomquistMarc A Suchard
Oct 5, 2010·Molecular Biology and Evolution·Beth ShapiroAndrew Rambaut

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Methods Mentioned

BETA
enzyme-linked immunosorbent assay
genotyping

Software Mentioned

R
Circuitscape
BEAST2
adegenet
poppr
gdistance
DAPC
BEAST
R package
SAMOVA

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