Expression of distinct maternal and somatic 5.8S, 18S, and 28S rRNA types during zebrafish development

RNA
Mauro D LocatiTimo M Breit

Abstract

There is mounting evidence that the ribosome is not a static translation machinery, but a cell-specific, adaptive system. Ribosomal variations have mostly been studied at the protein level, even though the essential transcriptional functions are primarily performed by rRNAs. At the RNA level, oocyte-specific 5S rRNAs are long known for Xenopus. Recently, we described for zebrafish a similar system in which the sole maternal-type 5S rRNA present in eggs is replaced completely during embryonic development by a somatic-type. Here, we report the discovery of an analogous system for the 45S rDNA elements: 5.8S, 18S, and 28S. The maternal-type 5.8S, 18S, and 28S rRNA sequences differ substantially from those of the somatic-type, plus the maternal-type rRNAs are also replaced by the somatic-type rRNAs during embryogenesis. We discuss the structural and functional implications of the observed sequence differences with respect to the translational functions of the 5.8S, 18S, and 28S rRNA elements. Finally, in silico evidence suggests that expansion segments (ES) in 18S rRNA, previously implicated in ribosome-mRNA interaction, may have a preference for interacting with specific mRNA genes. Taken together, our findings indicate that two d...Continue Reading

References

Jun 1, 1977·Cell·N Arnheim, E M Southern
Feb 1, 1988·Molecular and Biochemical Parasitology·T F McCutchanM L Sogin
Nov 13, 1987·Science·J H GundersonT F McCutchan
Aug 1, 1986·Journal of Biochemistry·H KomiyaS Takemura
Dec 9, 1985·Nucleic Acids Research·D K JemioloA E Dahlberg
Aug 15, 1974·Journal of Molecular Biology·J D RochaixA Barkken
Oct 1, 1983·Journal of Neurochemistry·A S StoykovaA A Hadjiolov
Sep 1, 1983·Developmental Biology·W M Wormington, D D Brown
Oct 15, 1993·Proceedings of the National Academy of Sciences of the United States of America·A A SzewczakI G Wool
Mar 25, 1993·Nucleic Acids Research·H Leffers, A H Andersen
Jul 1, 1995·Developmental Dynamics : an Official Publication of the American Association of Anatomists·C B KimmelT F Schilling
Oct 15, 1998·Proceedings of the National Academy of Sciences of the United States of America·P TranqueV P Mauro
Feb 26, 2000·Annual Review of Genetics·J Venema, D Tollervey
Apr 9, 2001·The Journal of Biological Chemistry·R M van SpaendonkA P Waters
Sep 1, 1972·FEBS Letters·M WegnezH Denis
Jul 12, 2002·Nature·Peter B Moore, Thomas A Steitz
Sep 11, 2002·Proceedings of the National Academy of Sciences of the United States of America·Vincent P Mauro, Gerald M Edelman
Jan 1, 1964·Proceedings of the National Academy of Sciences of the United States of America·D D BROWN, J B GURDON
May 1, 1964·Journal of Molecular Biology·D D BROWN, E LITTNA
Aug 17, 2004·The Journal of Biological Chemistry·Donald D Brown
Nov 6, 2004·The Biochemical Journal·Dmitri GraiferGalina Karpova
Sep 6, 2005·Science·Harry F Noller
Sep 25, 2007·Cell Cycle·Vincent P Mauro, Gerald M Edelman
Sep 26, 2007·Genome Génome / Conseil National De Recherches Canada·Ekaterina GornungFlavia Annesi
Nov 26, 2008·Gene·Alexander KellerMatthias Wolf
Jun 10, 2009·Bioinformatics·Heng LiUNKNOWN 1000 Genome Project Data Processing Subgroup
Nov 6, 2009·Annual Review of Genetics·Eric I Campos, Danny Reinberg

❮ Previous
Next ❯

Citations

Feb 10, 2018·Genome Génome / Conseil National De Recherches Canada·Mauro D LocatiTimo M Breit
Feb 6, 2019·Non-coding RNA·Marine LambertPatrick Provost
Feb 9, 2019·RNA·Max B Ferretti, Katrin Karbstein
Nov 23, 2019·Essays in Biochemistry·Oscar Ortega-Recalde, Timothy Alexander Hore
Apr 9, 2020·Biochemical Society Transactions·Mason A McCoolSusan J Baserga
Apr 25, 2020·The Journal of Cell Biology·Dan Li, Jianlong Wang
Feb 6, 2019·Nature Microbiology·Wooseok SongKangseok Lee
Jul 11, 2018·Biochemical Society Transactions·Huili Guo
Feb 23, 2018·Journal of Cell Science·Vladimir Despic, Karla M Neugebauer
May 5, 2018·Nature Reviews. Genetics·Naomi R Genuth, Maria Barna
Nov 14, 2018·Biochemical Society Transactions·Christian BatesMark P Ashe
Nov 23, 2020·Nucleic Acids Research·Wesley A PhelpsMiler T Lee
Feb 11, 2021·Wiley Interdisciplinary Reviews. RNA·Karl NorrisJulie Louise Aspden
Jun 24, 2020·Biochemical and Biophysical Research Communications·Boxiang TaoJin He
Jan 20, 2019·Developmental Biology·Andreas ZauckerKaruna Sampath
Jul 28, 2021·Trends in Biochemical Sciences·David M GayMartin D Jansson
Feb 24, 2018·Biochemistry·Dahyana Arias Escayola, Karla M Neugebauer
Aug 27, 2021·Mammalian Genome : Official Journal of the International Mammalian Genome Society·Qinyu Hao, Kannanganattu V Prasanth
Jul 7, 2021·Cell Biochemistry and Function·Reza RanjbarMortaza Taheri-Anganeh
Jul 28, 2021·RNA·Joseph Georgeson, Schraga Schwartz

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.