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Faster sequence alignment through GPU-accelerated restriction of the seed-and-extend search space

bioRxiv

Aug 1, 2014

Richard WiltonAlex Szalay

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Abstract

Motivation: In computing pairwise alignments of biological sequences, software implementations employ a variety of heuristics that decrease the computational effort involved in computing potential alignments. A key element in achieving high processing throughput is to identify and prior...read more

Mentioned in this Paper

Mapping, Vessel
Computer Software
Motivation
Heuristics
High-Throughput RNA Sequencing
Sequence Alignment
Anatomical Space Structure
Parallel Study
Location
Exertion
4
14
Paper Details
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  • Faster sequence alignment through GPU-accelerated restriction of the seed-and-extend search space

    bioRxiv

    Aug 1, 2014

    Richard WiltonAlex Szalay

    PMID: 990007641

    DOI: 10.1101/007641

    Abstract

    Motivation: In computing pairwise alignments of biological sequences, software implementations employ a variety of heuristics that decrease the computational effort involved in computing potential alignments. A key element in achieving high processing throughput is to identify and prior...read more

    Mentioned in this Paper

    Mapping, Vessel
    Computer Software
    Motivation
    Heuristics
    High-Throughput RNA Sequencing
    4
    14
    Paper Details
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