Field-Based High-Throughput Plant Phenotyping Reveals the Temporal Patterns of Quantitative Trait Loci Associated with Stress-Responsive Traits in Cotton

G3 : Genes - Genomes - Genetics
Duke PauliMichael A Gore

Abstract

The application of high-throughput plant phenotyping (HTPP) to continuously study plant populations under relevant growing conditions creates the possibility to more efficiently dissect the genetic basis of dynamic adaptive traits. Toward this end, we employed a field-based HTPP system that deployed sets of sensors to simultaneously measure canopy temperature, reflectance, and height on a cotton (Gossypium hirsutum L.) recombinant inbred line mapping population. The evaluation trials were conducted under well-watered and water-limited conditions in a replicated field experiment at a hot, arid location in central Arizona, with trait measurements taken at different times on multiple days across 2010-2012. Canopy temperature, normalized difference vegetation index (NDVI), height, and leaf area index (LAI) displayed moderate-to-high broad-sense heritabilities, as well as varied interactions among genotypes with water regime and time of day. Distinct temporal patterns of quantitative trait loci (QTL) expression were mostly observed for canopy temperature and NDVI, and varied across plant developmental stages. In addition, the strength of correlation between HTPP canopy traits and agronomic traits, such as lint yield, displayed a tim...Continue Reading

References

Nov 1, 1994·Genetics·G A Churchill, R W Doerge
Jul 19, 1994·Proceedings of the National Academy of Sciences of the United States of America·J W RadinE Zeiger
Nov 13, 2002·Plant Physiology·Ludmila RizhskyRon Mittler
Jan 3, 2009·BMC Bioinformatics·Shuangge Ma, Jian Huang
Sep 1, 2009·Proceedings of the National Academy of Sciences of the United States of America·Wolfram Schlenker, Michael J Roberts
Jun 18, 2011·Nature Reviews. Genetics·John W DaveyMark L Blaxter
Nov 15, 2011·Trends in Plant Science·Robert T Furbank, Mark Tester
Oct 22, 2013·Trends in Plant Science·José Luis Araus, Jill E Cairns
Oct 31, 2013·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Priyanka TyagiVasu Kuraparthy
Sep 23, 2014·G3 : Genes - Genomes - Genetics·Tobias WürschumHans Peter Maurer
Feb 1, 2013·Functional Plant Biology : FPB·Pedro Andrade-SanchezJeffrey W White
Mar 1, 2003·Functional Plant Biology : FPB·Manuela M ChavesJoão S Pereira

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Citations

Jun 26, 2017·Molecular Genetics and Genomics : MGG·Abdelraheem AbdelraheemJinfa F Zhang
Mar 3, 2018·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Junji SuShuxun Yu
Feb 14, 2018·G3 : Genes - Genomes - Genetics·Duke PauliMichael A Gore
May 1, 2019·Annual Review of Plant Biology·Andrew D B LeakeyDavid B Lobell
Feb 6, 2017·Frontiers in Plant Science·Talukder Z JuberyBaskar Ganapathysubramanian
May 8, 2018·Applications in Plant Sciences·Jose C TovarMalia A Gehan
Jan 22, 2021·Journal of Experimental Botany·Nathan T HeinS V Krishna Jagadish
Jun 3, 2021·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Daniel T SmithScott C Chapman
Mar 21, 2018·Trends in Plant Science·José Luis ArausJill E Cairns
Sep 21, 2021·Frontiers in Plant Science·Fabiana Freitas MoreiraKaty Martin Rainey

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Methods Mentioned

BETA
enzyme-linked immunosorbant assay
genotyping
environmental stress

Software Mentioned

IciMapping
BLASTN
AZMET
SAS
R
QTL IciMapping
ASReml
R Core Team
Quantum Geographic Information System
BLAST

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