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Flexible isoform-level differential expression analysis with Ballgown

bioRxiv

Mar 30, 2014

Alyssa C FrazeeJeffrey T Leek

Abstract

We have built a statistical package called Ballgown for estimating differential expression of genes, transcripts, or exons from RNA sequencing experiments. Ballgown is designed to work with the popular Cufflinks transcript assembly software and uses well-motivated statistical methods to...read more

Mentioned in this Paper

Computer Software
Study
Exons
Genes
Sequence Determinations, RNA
Protein Isoforms
Statistical Technique
Analysis
Transcriptome
Transcript
50
116
Paper Details
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Flexible isoform-level differential expression analysis with Ballgown

bioRxiv

Mar 30, 2014

Alyssa C FrazeeJeffrey T Leek

PMID: 990003665

DOI: 10.1101/003665

Abstract

We have built a statistical package called Ballgown for estimating differential expression of genes, transcripts, or exons from RNA sequencing experiments. Ballgown is designed to work with the popular Cufflinks transcript assembly software and uses well-motivated statistical methods to...read more

Mentioned in this Paper

Computer Software
Study
Exons
Genes
Sequence Determinations, RNA
Protein Isoforms
Statistical Technique
Analysis
Transcriptome
Transcript
50
116

Similar Papers Found In These Feeds

BioRxiv Preprints

BioRxiv is the preprint server for biology, operated by Cold Spring Harbor Laboratory. Here are the latest biology preprint articles from bioRxiv.

Related Papers

Bioinformatics

Polyester: simulating RNA-seq datasets with differential transcript expression

BioinformaticsMay 1, 2015
Alyssa C FrazeeJeffrey T Leek
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