FlyBase: updates to the Drosophila melanogaster knowledge base.

Nucleic Acids Research
Aoife LarkinFlyBase Consortium

Abstract

FlyBase (flybase.org) is an essential online database for researchers using Drosophila melanogaster as a model organism, facilitating access to a diverse array of information that includes genetic, molecular, genomic and reagent resources. Here, we describe the introduction of several new features at FlyBase, including Pathway Reports, paralog information, disease models based on orthology, customizable tables within reports and overview displays ('ribbons') of expression and disease data. We also describe a variety of recent important updates, including incorporation of a developmental proteome, upgrades to the GAL4 search tab, additional Experimental Tool Reports, migration to JBrowse for genome browsing and improvements to batch queries/downloads and the Fast-Track Your Paper tool.

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Citations

Jan 6, 2021·Nucleic Acids Research·Daniel J Rigden, Xosé M Fernández
Apr 9, 2021·Biochemistry·Kundan KumarSiddhesh S Kamat
May 1, 2021·International Journal of Molecular Sciences·Rebeka PopovicL Miguel Martins
May 12, 2021·American Journal of Medical Genetics. Part a·Tomoko UeharaToshiyuki Takano-Shimizu
May 12, 2021·Algorithms for Molecular Biology : AMB·Diego P RubertMarília D V Braga
Jun 3, 2021·Genes·Samantha C PetersonStacey L Hanlon
Jun 12, 2021·Epigenetics & Chromatin·Ying-Jiun C Chen, Sharon Y R Dent
Jul 21, 2021·Proceedings of the National Academy of Sciences of the United States of America·Hao WangJens Nielsen
Jun 8, 2021·Molecular Biology and Evolution·George SandlerAneil F Agrawal
Aug 19, 2021·Hereditas·Xiaoli CaiStefan Baumgartner
Sep 14, 2021·G3 : Genes - Genomes - Genetics·Satoshi KawatoIkuo Hirono
Sep 25, 2021·Genes & Genetic Systems·Takashi OhsakoToshiyuki Takano-Shimizu-Kouno
Oct 12, 2021·Nucleic Acids Research·Luca CsabaiTamás Korcsmáros
Oct 9, 2021·Journal of Molecular Biology·Ezgi UçkunRuth H Palmer
Nov 11, 2021·Nucleic Acids Research·Lynn M SchrimlCarol Greene
Nov 15, 2021·Molecular Ecology·Wei-Yun Lai, Christian Schlötterer
Nov 23, 2021·Royal Society Open Science·Louis P Watanabe, Nicole C Riddle

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Methods Mentioned

BETA
transgenic
RNA-seq

Software Mentioned

modENCODE
JBrowse genome browser
ID validator
DRSC Integrative Ortholog Prediction Tool ( DIOPT
QuickSearch
Chado
Batch Download
RNAcentral
Ensembl
Cytoscape

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