Gene-expression novelty in allopolyploid cotton: a proteomic perspective

Genetics
Guanjing HuJ F Wendel

Abstract

Allopolyploidization is accompanied by changes in gene expression that are thought to contribute to phenotypic diversification. Here we describe global changes in the single-celled cotton fiber proteome of two natural allopolyploid species (Gossypium hirsutum and G. barbadense) and living models of their diploid parents using two different proteomic approaches. In total, 1323 two-dimensional gel electrophoresis spots and 1652 identified proteins by isobaric tags for relative and absolute quantitation were quantitatively profiled during fiber elongation. Between allopolyploids and their diploid A- and D-genome progenitors, amounts of differential expression ranged from 4.4 to 12.8%. Over 80% of the allopolyploid proteome was additively expressed with respect to progenitor diploids. Interestingly, the fiber proteome of G. hirsutum resembles the parental A-genome more closely, where long, spinable fiber first evolved, than does the fiber proteome of G. barbadense. More protein expression patterns were A-dominant than D-dominant in G. hirsutum, but in G. barbadense, the direction of expression-level dominance switched from the D-genome to the A-genome during fiber development. Comparison of developmental changes between the two all...Continue Reading

References

Mar 21, 2001·Evolution & Development·W L ApplequistJ F Wendel
Apr 1, 2003·Proceedings of the National Academy of Sciences of the United States of America·Keith L AdamsJonathan F Wendel
Jun 23, 2004·The Plant Cell·Guillaume Blanc, Kenneth H Wolfe
Aug 19, 2004·The Plant Journal : for Cell and Molecular Biology·Jocelyn K C RoseRamu Subramanian Saravanan
Sep 21, 2005·Genetics·Jianlin WangZ Jeffrey Chen
Nov 24, 2005·Nature Reviews. Genetics·Luca Comai
Apr 6, 2006·Bioinformatics·Ryota Suzuki, Hidetoshi Shimodaira
Aug 11, 2006·The Plant Journal : for Cell and Molecular Biology·A BottleyR M D Koebner
Dec 7, 2007·The Plant Cell·Jay J Thelen, Scott C Peck
Apr 19, 2008·Proceedings of the National Academy of Sciences of the United States of America·Ran HovavJonathan F Wendel
Apr 26, 2008·Science·A R Leitch, I J Leitch
Nov 6, 2008·Annual Review of Genetics·Jeff J DoyleJonathan F Wendel
May 5, 2009·BMC Biology·Ryan A RappJonathan F Wendel
Jul 7, 2009·Annual Review of Plant Biology·Pamela S Soltis, Douglas E Soltis
Oct 7, 2009·Proceedings of the National Academy of Sciences of the United States of America·Misook HaZ Jeffrey Chen
Nov 21, 2009·The New Phytologist·Armel SalmonJonathan F Wendel
Feb 13, 2010·The New Phytologist·E SzadkowskiA-M Chèvre
May 4, 2010·Nucleic Acids Research·Zhou DuZhen Su
Mar 4, 2011·Proceedings of the National Academy of Sciences of the United States of America·James C SchnableMichael Freeling
Apr 7, 2011·Genetics·Michal Kenan-EichlerAvraham A Levy

❮ Previous
Next ❯

Citations

Mar 20, 2016·Biochimica Et Biophysica Acta·Douglas E SoltisPamela S Soltis
Mar 31, 2016·Molecular Ecology·Joseph P GallagherJonathan F Wendel
Sep 29, 2018·International Journal of Molecular Sciences·Wei-Jia LuJian-Fang Gui
May 16, 2017·Nature Reviews. Genetics·Yves Van de PeerKathleen Marchal
Feb 15, 2018·Frontiers in Plant Science·Kai FanWenxiong Lin
Oct 18, 2019·Acta Biochimica Et Biophysica Sinica·Xiaoyun ZhouYanying Qu
Feb 13, 2021·NAR Genomics and Bioinformatics·Komaki InoueKeiichi Mochida
Jun 10, 2019·Methods : a Companion to Methods in Enzymology·Adam Voshall, Etsuko N Moriyama
Mar 14, 2021·Genome Biology and Evolution·Ming-Rui LiLin-Feng Li

❮ Previous
Next ❯

Related Concepts

Trending Feeds

COVID-19

Coronaviruses encompass a large family of viruses that cause the common cold as well as more serious diseases, such as the ongoing outbreak of coronavirus disease 2019 (COVID-19; formally known as 2019-nCoV). Coronaviruses can spread from animals to humans; symptoms include fever, cough, shortness of breath, and breathing difficulties; in more severe cases, infection can lead to death. This feed covers recent research on COVID-19.

Blastomycosis

Blastomycosis fungal infections spread through inhaling Blastomyces dermatitidis spores. Discover the latest research on blastomycosis fungal infections here.

Nuclear Pore Complex in ALS/FTD

Alterations in nucleocytoplasmic transport, controlled by the nuclear pore complex, may be involved in the pathomechanism underlying multiple neurodegenerative diseases including Amyotrophic Lateral Sclerosis and Frontotemporal Dementia. Here is the latest research on the nuclear pore complex in ALS and FTD.

Applications of Molecular Barcoding

The concept of molecular barcoding is that each original DNA or RNA molecule is attached to a unique sequence barcode. Sequence reads having different barcodes represent different original molecules, while sequence reads having the same barcode are results of PCR duplication from one original molecule. Discover the latest research on molecular barcoding here.

Chronic Fatigue Syndrome

Chronic fatigue syndrome is a disease characterized by unexplained disabling fatigue; the pathology of which is incompletely understood. Discover the latest research on chronic fatigue syndrome here.

Evolution of Pluripotency

Pluripotency refers to the ability of a cell to develop into three primary germ cell layers of the embryo. This feed focuses on the mechanisms that underlie the evolution of pluripotency. Here is the latest research.

Position Effect Variegation

Position Effect Variagation occurs when a gene is inactivated due to its positioning near heterochromatic regions within a chromosome. Discover the latest research on Position Effect Variagation here.

STING Receptor Agonists

Stimulator of IFN genes (STING) are a group of transmembrane proteins that are involved in the induction of type I interferon that is important in the innate immune response. The stimulation of STING has been an active area of research in the treatment of cancer and infectious diseases. Here is the latest research on STING receptor agonists.

Microbicide

Microbicides are products that can be applied to vaginal or rectal mucosal surfaces with the goal of preventing, or at least significantly reducing, the transmission of sexually transmitted infections. Here is the latest research on microbicides.