Genetic diversity and phylogeography of Seewis virus in the Eurasian common shrew in Finland and Hungary.

Virology Journal
Hae Ji KangRichard Yanagihara

Abstract

Recent identification of a newfound hantavirus, designated Seewis virus (SWSV), in the Eurasian common shrew (Sorex araneus), captured in Switzerland, corroborates decades-old reports of hantaviral antigens in this shrew species from Russia. To ascertain the spatial or geographic variation of SWSV, archival liver tissues from 88 Eurasian common shrews, trapped in Finland in 1982 and in Hungary during 1997, 1999 and 2000, were analyzed for hantavirus RNAs by reverse transcription-polymerase chain reaction. SWSV RNAs were detected in 12 of 22 (54.5%) and 13 of 66 (19.7%) Eurasian common shrews from Finland and Hungary, respectively. Phylogenetic analyses of S- and L-segment sequences of SWSV strains, using maximum likelihood and Bayesian methods, revealed geographic-specific genetic variation, similar to the phylogeography of rodent-borne hantaviruses, suggesting long-standing hantavirus-host co-evolutionary adaptation.

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Citations

Jul 26, 2012·Archives of Virology·Mathias SchlegelBernd Köllner
Apr 30, 2010·Vector Borne and Zoonotic Diseases·Hae Ji KangRichard Yanagihara
Sep 8, 2011·The American Journal of Tropical Medicine and Hygiene·Hae Ji KangRichard Yanagihara
May 24, 2014·Trends in Microbiology·Shannon N BennettRichard Yanagihara
Jan 15, 2014·Virus Research·Richard YanagiharaJin-Won Song
Jul 6, 2014·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Jiaxin LingOlli Vapalahti
Jul 31, 2013·Virus Research·Katarina ResmanTatjana Avšič Zupanc
Sep 14, 2014·International Journal of Occupational Medicine and Environmental Health·Miklós OldalFerenc Jakab
Apr 23, 2014·Clinical Microbiology and Infection : the Official Publication of the European Society of Clinical Microbiology and Infectious Diseases·T Avšič-ŽupancM Korva
Dec 3, 2014·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Se Hun GuRichard Yanagihara
Aug 2, 2011·Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases·Wen-Ping GuoYong-Zhen Zhang
Jan 7, 2015·Current Opinion in Virology·Edward C Holmes, Yong-Zhen Zhang
May 14, 2016·Vector Borne and Zoonotic Diseases·Satoru AraiRichard Yanagihara
Mar 24, 2017·Vector Borne and Zoonotic Diseases·Anna ObiegalaMartin Pfeffer
Dec 11, 2019·Vector Borne and Zoonotic Diseases·Mónika MadaiFerenc Jakab
May 2, 2018·EcoHealth·Matthew T MilhollandJames N Mills
Apr 22, 2020·The American Journal of Tropical Medicine and Hygiene·Seung-Ho LeeJin-Won Song

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Datasets Mentioned

BETA
GQ293114
GQ293134
GQ293138

Methods Mentioned

BETA
PCR

Software Mentioned

jModeltest
Chimaera
RAxML Blackbox
SiScan
3SEQ
MrBayes
RDP
MaxChi
HyPhy
Bootscan

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