GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox

Plant Physiology
Philip ZimmermannWilhelm Gruissem

Abstract

High-throughput gene expression analysis has become a frequent and powerful research tool in biology. At present, however, few software applications have been developed for biologists to query large microarray gene expression databases using a Web-browser interface. We present GENEVESTIGATOR, a database and Web-browser data mining interface for Affymetrix GeneChip data. Users can query the database to retrieve the expression patterns of individual genes throughout chosen environmental conditions, growth stages, or organs. Reversely, mining tools allow users to identify genes specifically expressed during selected stresses, growth stages, or in particular organs. Using GENEVESTIGATOR, the gene expression profiles of more than 22,000 Arabidopsis genes can be obtained, including those of 10,600 currently uncharacterized genes. The objective of this software application is to direct gene functional discovery and design of new experiments by providing plant biologists with contextual information on the expression of genes. The database and analysis toolbox is available as a community resource at https://www.genevestigator.ethz.ch.

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Citations

Jan 1, 2008·The Arabidopsis Book·Yan Lu, Robert L Last
Sep 10, 2008·TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·Jana MoravcíkováJana Libantová
Mar 16, 2006·Plant Cell Reports·Eliana NutricatiLuigi De Bellis
Jan 12, 2007·Planta·Sadaf Khan, Julie M Stone
Aug 13, 2009·Planta·Polina MatreCathrine Lillo
Dec 21, 2006·Molecular Genetics and Genomics : MGG·Miguel Angel Moreno-RisuenoPilar Carbonero
Feb 14, 2008·Molecular Genetics and Genomics : MGG·Manjeet KumariMichael K Deyholos
May 21, 2008·Molecular Genetics and Genomics : MGG·Mohammed NuruzzamanXingming Lian
Mar 17, 2011·Molecular Genetics and Genomics : MGG·Carlos Romá-MateoRafael Pulido
Sep 21, 2011·Molecular Genetics and Genomics : MGG·Takumi YoshidaKazuko Yamaguchi-Shinozaki
Dec 25, 2009·Sexual Plant Reproduction·Anna A DobritsaRobert J Swanson
Dec 25, 2009·Sexual Plant Reproduction·Emily P UpdegraffDaphne Preuss

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