Genome Identification of B-BOX Gene Family Members in Seven Rosaceae Species and Their Expression Analysis in Response to Flower Induction in Malus domestica

Molecules : a Journal of Synthetic Chemistry and Natural Product Chemistry
Abdullah ShalmaniMingyu Han

Abstract

BBX proteins play important roles in regulating plant growth and development including photomorphogenesis, photoperiodic regulation of flowering, and responses to biotic and abiotic stresses. At present, the genomes of seven Rosaceae fruit species have been fully sequenced. However, little is known about the BBX gene family and their evolutionary history in these Rosaceae species. Therefore, in this study total, 212 BBX genes were investigated from seven Rosaceae species (67 from Malus × domestica, 40 from Pyruscommunis, 22 from Rosa Chinesis, 20 from Prunuspersica, 21 from Fragariavesca, 22 from Prunusavium, and 20 from Rubusoccidentalis). The chemical properties, gene structures, and evolutionary relationships of the BBX genes were also studied. All the BBX genes were grouped into six subfamilies on the basis of their phylogenetic relationships and structural features. Analysis of gene structure, segmental and tandem duplication, gene phylogeny, and tissue-specific expression with the ArrayExpress database showed their diversification in function, quantity, and structure. The expression profiles of 19 MdBBX genes in different tissues were evaluated through qRT-PCR. These genes showed distinct transcription level among the tes...Continue Reading

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Citations

Apr 4, 2021·International Journal of Molecular Sciences·Urszula Talar, Agnieszka Kiełbowicz-Matuk
Mar 22, 2021··Tianlai Chen, Zihong Chen

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Methods Mentioned

BETA
two hybrids
PCR
electrophoresis

Software Mentioned

Multiple Expectation for Motif Elicitation ( MEME )
GSDS
ArrayExpress
DNAMAN
Gene Structure Display Server
Circos
MEGA
BLASTP
ExPaSy
BLAST

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