Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae

Frontiers in Microbiology
Maria Del Carmen Montero-CalasanzMarkus Göker

Abstract

Geodermatophilaceae (order Geodermatophilales, class Actinobacteria) form a comparatively isolated family within the phylum Actinobacteria and harbor many strains adapted to extreme ecological niches and tolerant against reactive oxygen species. Clarifying the evolutionary history of Geodermatophilaceae was so far mainly hampered by the insufficient resolution of the main phylogenetic marker in use, the 16S rRNA gene. In conjunction with the taxonomic characterisation of a motile and aerobic strain, designated YIM M13156T and phylogenetically located within the family, we here carried out a phylogenetic analysis of the genome sequences now available for the type strains of Geodermatophilaceae and re-analyzed the previously assembled phenotypic data. The results indicated that the largest genus, Geodermatophilus, is not monophyletic, hence the arrangement of the genera of Geodermatophilaceae must be reconsidered. Taxonomic markers such as polar lipids and fatty-acids profile, cellular features and temperature ranges are indeed heterogeneous within Geodermatophilus. In contrast to previous studies, we also address which of these features can be interpreted as apomorphies of which taxon, according to the principles of phylogenetic...Continue Reading

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Citations

Jul 4, 2018·International Journal of Systematic and Evolutionary Microbiology·Jean Franco CastroMichael Goodfellow
Aug 17, 2019·International Journal of Systematic and Evolutionary Microbiology·Lei LiYan-Hua Lu
Dec 7, 2019·International Journal of Systematic and Evolutionary Microbiology·Nimaichand SalamWen-Jun Li
Dec 5, 2019·International Journal of Systematic and Evolutionary Microbiology·Qin-Qin GaoJian-Hong Xu
May 7, 2020·International Journal of Systematic and Evolutionary Microbiology·Patrycja GolińskaMichael Goodfellow
Oct 27, 2018·Frontiers in Microbiology·Yang LiuZongze Shao
Jul 1, 2018·International Journal of Systematic and Evolutionary Microbiology·Aharon Oren, George M Garrity
Oct 15, 2019·Frontiers in Microbiology·Marina García-LópezMarkus Göker
May 1, 2018·International Journal of Systematic and Evolutionary Microbiology·Aharon Oren, George Garrity
Sep 7, 2018·Frontiers in Microbiology·Imen NouiouiMarkus Göker
May 18, 2019·Nature Communications·Jan P Meier-Kolthoff, Markus Göker
Mar 13, 2021·Archives of Microbiology·Aysel Veyisoglu

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Datasets Mentioned

BETA
LT746188
FMUH01000001

Software Mentioned

opm
FastME
R
randomForest
BLAST Phylogeny
Integrated Microbial Genomes system
MIDI
pvclust
R package

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